A4WPJ9 (A4WPJ9_RHOS5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA topoisomerase IV, B subunit EMBL ABP69313.1
EC=5.99.1.3 EMBL ABP69313.1

Gene names

Ordered Locus Names:

Rsph17025_0407

Organism

Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) [Complete proteome] [HAMAP]

Taxonomic identifier

349102 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Rhodobacter

Protein attributes

Sequence length	663 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the type II topoisomerase family. RuleBase RU000380

Ontologies

Keywords
Ligand	ATP-binding RuleBase RU000380 SAAS SAAS002288 Nucleotide-binding
Molecular function	Isomerase Topoisomerase RuleBase RU000380 SAAS SAAS002288
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA topological change Inferred from electronic annotation. Source: InterPro
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA topoisomerase (ATP-hydrolyzing) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A4WPJ9 [UniParc]. Last modified May 29, 2007. Version 1. Checksum: 7BAAF53B882684AD	FASTA	663	72,768
	10 20 30 40 50 60 MVFQSSRKNR AAMANDLLSG QPETYDASSI EVLEGLEPVR KRPGMYIGGT DERALHHLVA 70 80 90 100 110 120 EILDNSMDEA VAGHATRIEV ELHADHSVTI RDNGRGIPVD PHPKFPGKSA LEVILCTLHA 130 140 150 160 170 180 GGKFSGKAYQ TSGGLHGVGA SVVNALSDTM RVEVARNREL WVQSFARGIA QGPVKMVGAA 190 200 210 220 230 240 SNRRGTTITF HPDPEIFGHL QFKPARLMKM ARSKAYLFSG VEIRWKSAIP DGDTPQEAVF 250 260 270 280 290 300 HFPGGLGDYL AEQLSGASTY AEKPFAGKVG FQEKFGVPGS VEWAINWTPA RDGFIQSYCN 310 320 330 340 350 360 TVPTPEGGTH ESGFWSAILK GIRAYGELVK NRKADQITRE DMLAGGSALI SVFIREPQFV 370 380 390 400 410 420 GQTKDRLSTE EAAKLVENAV RDHFDNWLAA NTKSAGAILD FLVLRAEERL RRRQEKETQR 430 440 450 460 470 480 KSATKKLRLP GKLVDCSATA RDGTELFIVE GDSAGGSAKM ARDRTLQALL PLRGKILNVL 490 500 510 520 530 540 GAASGKMGAN AEINDLCLAL GTGMGTRFNI DDLRYDKIII MTDADVDGAH IASLLMTFFF 550 560 570 580 590 600 TQMRPLIDRG HLYLACPPLY RLTQGAKRLY VADDVEKELW LAKGLGGKGK IDVQRFKGLG 610 620 630 640 650 660 EMDAKDLKDT TMNPATRKLI RVSIDEDEPG ETGDLVERLM GKKPELRFQY IQENARFVEE LDV

References

[1]

"Complete sequence of chromosome of Rhodobacter sphaeroides ATCC 17025." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Kim E., Richardson P., Mackenzie C., Choudhary M., Donohue T.J., Kaplan S. Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 17025 / ATH 2.4.3.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000661 Genomic DNA. Translation: ABP69313.1.
RefSeq	YP_001166618.1. NC_009428.1.
3D structure databases
ProteinModelPortal	A4WPJ9.
ModBase	Search...
Protein-protein interaction databases
STRING	A4WPJ9.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5082495.
GenomeReviews	Gene locus Rsph17025_0407 in contig CP000661_GR.
KEGG	rsq:Rsph17025_0407.
PATRIC	23158936. VBIRhoSph94549_0411.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0187.
HOGENOM	HBG304889.
OMA	FKPARLM.
PhylomeDB	A4WPJ9.
ProtClustDB	PRK05559.
Enzyme and pathway databases
BioCyc	RSPH349102:RSPH17025_0407-MONOMER.
Family and domain databases
InterPro	IPR003594. ATPase-like_ATP-bd. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR001241. Topo_IIA. IPR013759. Topo_IIA_B/N_ab. IPR002288. Topo_IIA_B_C. IPR013506. Topo_IIA_bsu_dom2. IPR013760. Topo_IIA_cen. IPR018522. TopoIIA_CS. IPR005737. TopoIV_B_Gneg. [Graphical view]
Gene3D	G3DSA:3.30.565.10. ATP_bd_ATPase. 1 hit. G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit. G3DSA:3.40.50.670. Topo_IIA_B/N_ab. 1 hit.
KO	K02622.
Pfam	PF00204. DNA_gyraseB. 1 hit. PF00986. DNA_gyraseB_C. 1 hit. PF02518. HATPase_c. 1 hit. [Graphical view]
PRINTS	PR00418. TPI2FAMILY.
SMART	SM00387. HATPase_c. 1 hit. SM00433. TOP2c. 1 hit. [Graphical view]
SUPFAM	SSF55874. ATP_bd_ATPase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit. SSF56719. Topo_IIA_cen. 1 hit.
TIGRFAMs	TIGR01055. ParE_Gneg. 1 hit.
PROSITE	PS00177. TOPOISOMERASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A4WPJ9_RHOS5

Accession

Primary (citable) accession number: A4WPJ9

Entry history

Integrated into UniProtKB/TrEMBL:	May 29, 2007
Last sequence update:	May 29, 2007
Last modified:	January 25, 2012
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)