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Protein

50S ribosomal protein L6

Gene

rpl6

Organism
Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

Keywords - Ligandi

RNA-binding, rRNA-bindingUniRule annotation

Enzyme and pathway databases

BioCyciPARS340102:GHGQ-1594-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L6UniRule annotation
Gene namesi
Name:rpl6UniRule annotation
Ordered Locus Names:Pars_1576Imported
OrganismiPyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)Imported
Taxonomic identifieri340102 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiThermoprotealesThermoproteaceaePyrobaculum
ProteomesiUP000001567 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliA4WL63.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L6P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0097.
HOGENOMiHOG000039905.
KOiK02933.
OMAiPRRTTIH.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
HAMAPiMF_01365_A. Ribosomal_L6_A.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019907. Ribosomal_L6P_arc.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMiSSF56053. SSF56053. 2 hits.
TIGRFAMsiTIGR03653. uL6_arch. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A4WL63-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRVVYSVEEV EIPKGVNVSI EKTGPFDYVV KVKGPLGELV KEFRNTPVVM
60 70 80 90 100
NVQDGKILLE VFNVRKKEYA ILGTYKGILK NMFLGVTKGW RYKLKIIYTH
110 120 130 140 150
FPVLAKVQGS QLVIENFLGR KSKITLDIPK GVKVEVKGKE DIVVEGIDRE
160 170 180 190
LVGTFASSIQ AATELHGDER PSPHGREGTL GVVDGIYVVG VEHIKA
Length:196
Mass (Da):21,747
Last modified:May 29, 2007 - v1
Checksum:i4ADA843B37AD3524
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000660 Genomic DNA. Translation: ABP51130.1.
RefSeqiWP_011901037.1. NC_009376.1.
YP_001153782.1. NC_009376.1.

Genome annotation databases

EnsemblBacteriaiABP51130; ABP51130; Pars_1576.
GeneIDi5054194.
KEGGipas:Pars_1576.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000660 Genomic DNA. Translation: ABP51130.1.
RefSeqiWP_011901037.1. NC_009376.1.
YP_001153782.1. NC_009376.1.

3D structure databases

ProteinModelPortaliA4WL63.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABP51130; ABP51130; Pars_1576.
GeneIDi5054194.
KEGGipas:Pars_1576.

Phylogenomic databases

eggNOGiCOG0097.
HOGENOMiHOG000039905.
KOiK02933.
OMAiPRRTTIH.

Enzyme and pathway databases

BioCyciPARS340102:GHGQ-1594-MONOMER.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
HAMAPiMF_01365_A. Ribosomal_L6_A.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019907. Ribosomal_L6P_arc.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMiSSF56053. SSF56053. 2 hits.
TIGRFAMsiTIGR03653. uL6_arch. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 13514 / JCM 11321Imported.

Entry informationi

Entry nameiA4WL63_PYRAR
AccessioniPrimary (citable) accession number: A4WL63
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: July 22, 2015
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.