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A4WL63 (A4WL63_PYRAR) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
50S ribosomal protein L6 HAMAP-Rule MF_01365
Gene names
Name:rpl6 HAMAP-Rule MF_01365
Ordered Locus Names:Pars_1576 EMBL ABP51130.1
OrganismPyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) [Complete proteome] [HAMAP] EMBL ABP51130.1
Taxonomic identifier340102 [NCBI]
Taxonomic lineageArchaeaCrenarchaeotaThermoproteiThermoprotealesThermoproteaceaePyrobaculum

Protein attributes

Sequence length196 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center By similarity. HAMAP-Rule MF_01365

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_01365

Sequence similarities

Belongs to the ribosomal protein L6P family. HAMAP-Rule MF_01365

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding HAMAP-Rule MF_01365
   Molecular functionRibonucleoprotein
Ribosomal protein HAMAP-Rule MF_01365 EMBL ABP51130.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A4WL63 [UniParc].

Last modified May 29, 2007. Version 1.
Checksum: 4ADA843B37AD3524

FASTA19621,747
        10         20         30         40         50         60 
MRVVYSVEEV EIPKGVNVSI EKTGPFDYVV KVKGPLGELV KEFRNTPVVM NVQDGKILLE 

        70         80         90        100        110        120 
VFNVRKKEYA ILGTYKGILK NMFLGVTKGW RYKLKIIYTH FPVLAKVQGS QLVIENFLGR 

       130        140        150        160        170        180 
KSKITLDIPK GVKVEVKGKE DIVVEGIDRE LVGTFASSIQ AATELHGDER PSPHGREGTL 

       190 
GVVDGIYVVG VEHIKA 

« Hide

References

[1]"Complete sequence of Pyrobaculum arsenaticum DSM 13514."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. expand/collapse author list , Cozen A.E., Fitz-Gibbon S.T., House C.H., Saltikov C., Lowe T.M., Richardson P.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 13514 / JCM 11321.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000660 Genomic DNA. Translation: ABP51130.1.
RefSeqYP_001153782.1. NC_009376.1.

3D structure databases

ProteinModelPortalA4WL63.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING340102.Pars_1576.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABP51130; ABP51130; Pars_1576.
GeneID5054194.
KEGGpas:Pars_1576.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0097.
HOGENOMHOG000039905.
KOK02933.
OMALKVVYSH.
ProtClustDBPRK05518.

Enzyme and pathway databases

BioCycPARS340102:GHGQ-1594-MONOMER.

Family and domain databases

Gene3D3.90.930.12. 2 hits.
HAMAPMF_01365_A. Ribosomal_L6_A.
InterProIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019907. Ribosomal_L6P_arc.
[Graphical view]
PANTHERPTHR11655. PTHR11655. 1 hit.
PTHR11655:SF1. PTHR11655:SF1. 1 hit.
PfamPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMSSF56053. SSF56053. 2 hits.
TIGRFAMsTIGR03653. arch_L6P. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA4WL63_PYRAR
AccessionPrimary (citable) accession number: A4WL63
Entry history
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: February 19, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)