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Protein

50S ribosomal protein L6

Gene

rpl6

Organism
Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinUniRule annotationImported, RNA-binding, rRNA-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L6UniRule annotation
Gene namesi
Name:rpl6UniRule annotation
Ordered Locus Names:Pars_1576Imported
OrganismiPyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)Imported
Taxonomic identifieri340102 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiThermoprotealesThermoproteaceaePyrobaculum
Proteomesi
  • UP000001567 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliA4WL63.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini12 – 89Ribosomal_L6InterPro annotationAdd BLAST78
Domaini101 – 157Ribosomal_L6InterPro annotationAdd BLAST57

Sequence similaritiesi

Belongs to the universal ribosomal protein uL6 family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000039905.
KOiK02933.
OMAiWQGGRKH.
OrthoDBiPOG093Z0CBF.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
HAMAPiMF_01365_A. Ribosomal_L6_A. 1 hit.
InterProiView protein in InterPro
IPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR036789. Ribosomal_L6_a/b-dom_sf.
IPR019907. Ribosomal_L6P_arc.
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiView protein in Pfam
PF00347. Ribosomal_L6. 2 hits.
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMiSSF56053. SSF56053. 2 hits.
TIGRFAMsiTIGR03653. uL6_arch. 1 hit.

Sequencei

Sequence statusi: Complete.

A4WL63-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRVVYSVEEV EIPKGVNVSI EKTGPFDYVV KVKGPLGELV KEFRNTPVVM
60 70 80 90 100
NVQDGKILLE VFNVRKKEYA ILGTYKGILK NMFLGVTKGW RYKLKIIYTH
110 120 130 140 150
FPVLAKVQGS QLVIENFLGR KSKITLDIPK GVKVEVKGKE DIVVEGIDRE
160 170 180 190
LVGTFASSIQ AATELHGDER PSPHGREGTL GVVDGIYVVG VEHIKA
Length:196
Mass (Da):21,747
Last modified:May 29, 2007 - v1
Checksum:i4ADA843B37AD3524
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000660 Genomic DNA. Translation: ABP51130.1.

Genome annotation databases

EnsemblBacteriaiABP51130; ABP51130; Pars_1576.
KEGGipas:Pars_1576.

Similar proteinsi

Entry informationi

Entry nameiA4WL63_PYRAR
AccessioniPrimary (citable) accession number: A4WL63
Entry historyiIntegrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: October 25, 2017
This is version 62 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported