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A4VMW1

- A4VMW1_PSEU5

UniProt

A4VMW1 - A4VMW1_PSEU5

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Protein
Submitted name:

DNA ligase, ATP-dependent

Gene

PST_2662

Organism
Pseudomonas stutzeri (strain A1501)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPSTU379731:GJER-2657-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase, ATP-dependentImported
Gene namesi
Ordered Locus Names:PST_2662Imported
OrganismiPseudomonas stutzeri (strain A1501)Imported
Taxonomic identifieri379731 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000233: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi379731.PST_2662.

Structurei

3D structure databases

ProteinModelPortaliA4VMW1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiGEFYPFQ.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4VMW1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKAFATLYSR LDATTSSNAK LAAMRDYFRE ADPSDAAWAV YFLAGGRPRQ
60 70 80 90 100
LVPTRALRET AMQAAGLPEW LFEESYQAVG DMAETISLLM SEAEHSSEDG
110 120 130 140 150
LAVWMQDRLL PLRGLPPEEL AERLPALWAQ LDRLSLMVCI KLITGAFRVG
160 170 180 190 200
VSKLLVTRAL ASLADLDPKR VAQRLVGYTD LSHRPSAEGY RALIAEESEH
210 220 230 240 250
EHAQRGGQPY PFFLAHALQA PVDTFDTLLG APDNWFIEWK WDGIRAQLVK
260 270 280 290 300
RDGQIWVWSR GEELVSERFP ELCELARCLP DGTVIDGEIL VWKHDPETPA
310 320 330 340 350
GELFDAASTG EPSADGFGVQ PFALLQQRIG RKNLTAKVLQ DAPVAVLAYD
360 370 380 390 400
LLEWQGDDWR QREHRERRQQ LEAVVGQCPS PQLMLSPLVS GADWQDLARQ
410 420 430 440 450
REASRALGVE GMMIKARAAQ YGVGRTKDVG VWWKWKIDPY SVDAVLIYAQ
460 470 480 490 500
RGHGRRASLY TDYTFAVWDG EPGDHERKLV PFAKAYSGLT DEEMRKVDAI
510 520 530 540 550
VRKTTVEKFG PVRSVTPTLV FELGFEGIAA SSRHKSGIAV RFPRMLRWRL
560
DKPVEEADTL ATLRELLG
Length:568
Mass (Da):63,680
Last modified:May 29, 2007 - v1
Checksum:i222BDDE93F28A196
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000304 Genomic DNA. Translation: ABP80312.1.
RefSeqiYP_001173154.1. NC_009434.1.

Genome annotation databases

EnsemblBacteriaiABP80312; ABP80312; PST_2662.
GeneIDi5095624.
KEGGipsa:PST_2662.
PATRICi19965822. VBIPseStu31643_2665.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000304 Genomic DNA. Translation: ABP80312.1 .
RefSeqi YP_001173154.1. NC_009434.1.

3D structure databases

ProteinModelPortali A4VMW1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 379731.PST_2662.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABP80312 ; ABP80312 ; PST_2662 .
GeneIDi 5095624.
KEGGi psa:PST_2662.
PATRICi 19965822. VBIPseStu31643_2665.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi GEFYPFQ.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci PSTU379731:GJER-2657-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the metabolically versatile and root-associated nitrogen-fixing bacterium Pseudomonas stutzeri A1501."
    Yan Y., Yang J., Dou Y., Ping S., Chen M., Yao Z., Li H., Lu W., Zhang W., Peng J., Liu W., He S., Geng L., Zhang X., Yang F., Li D., Lin Z., Wang Y.
    , Elmerich C., Lin M., Jin Q.
    Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: A1501Imported.

Entry informationi

Entry nameiA4VMW1_PSEU5
AccessioniPrimary (citable) accession number: A4VMW1
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: October 1, 2014
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3