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A4VMW1

- A4VMW1_PSEU5

UniProt

A4VMW1 - A4VMW1_PSEU5

Protein
Submitted name:

DNA ligase, ATP-dependent

Gene

PST_2662

Organism
Pseudomonas stutzeri (strain A1501)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 48 (01 Oct 2014)
      Sequence version 1 (29 May 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPSTU379731:GJER-2657-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase, ATP-dependentImported
    Gene namesi
    Ordered Locus Names:PST_2662Imported
    OrganismiPseudomonas stutzeri (strain A1501)Imported
    Taxonomic identifieri379731 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000000233: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi379731.PST_2662.

    Structurei

    3D structure databases

    ProteinModelPortaliA4VMW1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiGEFYPFQ.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A4VMW1-1 [UniParc]FASTAAdd to Basket

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    MKAFATLYSR LDATTSSNAK LAAMRDYFRE ADPSDAAWAV YFLAGGRPRQ    50
    LVPTRALRET AMQAAGLPEW LFEESYQAVG DMAETISLLM SEAEHSSEDG 100
    LAVWMQDRLL PLRGLPPEEL AERLPALWAQ LDRLSLMVCI KLITGAFRVG 150
    VSKLLVTRAL ASLADLDPKR VAQRLVGYTD LSHRPSAEGY RALIAEESEH 200
    EHAQRGGQPY PFFLAHALQA PVDTFDTLLG APDNWFIEWK WDGIRAQLVK 250
    RDGQIWVWSR GEELVSERFP ELCELARCLP DGTVIDGEIL VWKHDPETPA 300
    GELFDAASTG EPSADGFGVQ PFALLQQRIG RKNLTAKVLQ DAPVAVLAYD 350
    LLEWQGDDWR QREHRERRQQ LEAVVGQCPS PQLMLSPLVS GADWQDLARQ 400
    REASRALGVE GMMIKARAAQ YGVGRTKDVG VWWKWKIDPY SVDAVLIYAQ 450
    RGHGRRASLY TDYTFAVWDG EPGDHERKLV PFAKAYSGLT DEEMRKVDAI 500
    VRKTTVEKFG PVRSVTPTLV FELGFEGIAA SSRHKSGIAV RFPRMLRWRL 550
    DKPVEEADTL ATLRELLG 568
    Length:568
    Mass (Da):63,680
    Last modified:May 29, 2007 - v1
    Checksum:i222BDDE93F28A196
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000304 Genomic DNA. Translation: ABP80312.1.
    RefSeqiYP_001173154.1. NC_009434.1.

    Genome annotation databases

    EnsemblBacteriaiABP80312; ABP80312; PST_2662.
    GeneIDi5095624.
    KEGGipsa:PST_2662.
    PATRICi19965822. VBIPseStu31643_2665.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000304 Genomic DNA. Translation: ABP80312.1 .
    RefSeqi YP_001173154.1. NC_009434.1.

    3D structure databases

    ProteinModelPortali A4VMW1.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 379731.PST_2662.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABP80312 ; ABP80312 ; PST_2662 .
    GeneIDi 5095624.
    KEGGi psa:PST_2662.
    PATRICi 19965822. VBIPseStu31643_2665.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi GEFYPFQ.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci PSTU379731:GJER-2657-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the metabolically versatile and root-associated nitrogen-fixing bacterium Pseudomonas stutzeri A1501."
      Yan Y., Yang J., Dou Y., Ping S., Chen M., Yao Z., Li H., Lu W., Zhang W., Peng J., Liu W., He S., Geng L., Zhang X., Yang F., Li D., Lin Z., Wang Y.
      , Elmerich C., Lin M., Jin Q.
      Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: A1501Imported.

    Entry informationi

    Entry nameiA4VMW1_PSEU5
    AccessioniPrimary (citable) accession number: A4VMW1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 29, 2007
    Last sequence update: May 29, 2007
    Last modified: October 1, 2014
    This is version 48 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3