A4VMW1 (A4VMW1_PSEU5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase, ATP-dependent EMBL ABP80312.1

Gene names

Ordered Locus Names:

PST_2662

Organism

Pseudomonas stutzeri (strain A1501) [Complete proteome] [HAMAP] EMBL ABP80312.1

Taxonomic identifier

379731 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas stutzeri group › Pseudomonas stutzeri subgroup › Pseudomonas stutzeri

Protein attributes

Sequence length	568 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABP80312.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A4VMW1 [UniParc]. Last modified May 29, 2007. Version 1. Checksum: 222BDDE93F28A196	FASTA	568	63,680
	10 20 30 40 50 60 MKAFATLYSR LDATTSSNAK LAAMRDYFRE ADPSDAAWAV YFLAGGRPRQ LVPTRALRET 70 80 90 100 110 120 AMQAAGLPEW LFEESYQAVG DMAETISLLM SEAEHSSEDG LAVWMQDRLL PLRGLPPEEL 130 140 150 160 170 180 AERLPALWAQ LDRLSLMVCI KLITGAFRVG VSKLLVTRAL ASLADLDPKR VAQRLVGYTD 190 200 210 220 230 240 LSHRPSAEGY RALIAEESEH EHAQRGGQPY PFFLAHALQA PVDTFDTLLG APDNWFIEWK 250 260 270 280 290 300 WDGIRAQLVK RDGQIWVWSR GEELVSERFP ELCELARCLP DGTVIDGEIL VWKHDPETPA 310 320 330 340 350 360 GELFDAASTG EPSADGFGVQ PFALLQQRIG RKNLTAKVLQ DAPVAVLAYD LLEWQGDDWR 370 380 390 400 410 420 QREHRERRQQ LEAVVGQCPS PQLMLSPLVS GADWQDLARQ REASRALGVE GMMIKARAAQ 430 440 450 460 470 480 YGVGRTKDVG VWWKWKIDPY SVDAVLIYAQ RGHGRRASLY TDYTFAVWDG EPGDHERKLV 490 500 510 520 530 540 PFAKAYSGLT DEEMRKVDAI VRKTTVEKFG PVRSVTPTLV FELGFEGIAA SSRHKSGIAV 550 560 RFPRMLRWRL DKPVEEADTL ATLRELLG

References

[1]

"Complete genome sequence of the metabolically versatile and root-associated nitrogen-fixing bacterium Pseudomonas stutzeri A1501." Yan Y., Yang J., Dou Y., Ping S., Chen M., Yao Z., Li H., Lu W., Zhang W., Peng J., Liu W., He S., Geng L., Zhang X., Yang F., Li D., Lin Z., Wang Y. , Elmerich C., Lin M., Jin Q. Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: A1501.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000304 Genomic DNA. Translation: ABP80312.1.
RefSeq	YP_001173154.1. NC_009434.1.
3D structure databases
ProteinModelPortal	A4VMW1.
ModBase	Search...
Protein-protein interaction databases
STRING	379731.PST_2662.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABP80312; ABP80312; PST_2662.
GeneID	5095624.
KEGG	psa:PST_2662.
PATRIC	19965822. VBIPseStu31643_2665.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Enzyme and pathway databases
BioCyc	PSTU379731:GJER-2657-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A4VMW1_PSEU5

Accession

Primary (citable) accession number: A4VMW1

Entry history

Integrated into UniProtKB/TrEMBL:	May 29, 2007
Last sequence update:	May 29, 2007
Last modified:	May 1, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)