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A4VLE4

- A4VLE4_PSEU5

UniProt

A4VLE4 - A4VLE4_PSEU5

Protein
Submitted name:

DNA ligase, ATP-dependent, putative

Gene

PST_2130

Organism
Pseudomonas stutzeri (strain A1501)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 1 (29 May 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPSTU379731:GJER-2128-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase, ATP-dependent, putativeImported
    Gene namesi
    Ordered Locus Names:PST_2130Imported
    OrganismiPseudomonas stutzeri (strain A1501)Imported
    Taxonomic identifieri379731 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000000233: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi379731.PST_2130.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSACDMAL.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A4VLE4-1 [UniParc]FASTAAdd to Basket

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    MALEDYQRMR DFAATPEPAG KARPKPRKSQ ALQYCIQKHD ATRLHYDFRL    50
    ELDGTLKSWA IPKGPSLDPG VRRLAVHVED HPLEYATFEG NIPEGHYGAG 100
    DVIVWDRGVW TPQGDPQEGY RKGKLKFSLE GEKLAGSWNL VRTQMDGKKE 150
    QWFLIKSRDE AAREESEYDI VTAEPDSVLS DRTLVPRKRG AKARVAETPP 200
    APVKAPAKKR TPARRKAKVA LEGAVPAELP ERFKPQLATL VDTVPVGDWR 250
    YEIKFDGYRM LARIDAGEVR LFTRNGHDWT AKMPQQAAAL AGLGLESGWL 300
    DGEVVVPNEE GTPDFQALQN AFEAGRSGSI LYYLFDMPYL NGMDLREVAL 350
    EQRRAALREV LERSDSELLR FSEDFTEQPD SILESACQMK LEGLIGKRAG 400
    STYTSRRSSS WVKIKCSNRQ EFIIVGYTQP KGTRTGFGAL LLGLHDDKGE 450
    LRYAGKVGTG FNHATLQSLH KKLKKLETDK SPLAKAPPAA DARGAQWLKP 500
    ELMCEVAYAE MTRQGVVRHS VFHGLRTDKP AEAITHERAK PVARATPNVA 550
    GKADPLGSGR IKISNPERVI DPSSGITKIE LARFYAQIAP WALPQLQNRP 600
    LALVRAPEGI TGELFFQKHA DKLAIPHITQ LDPALDPKHG ALLVIDSAEA 650
    LVGAAQMGTI ELHSWNAVAP DLEHPDRFVL DLDPDPALPW KRMLEATQLT 700
    QTLLDEIGLA SFLKTSGGKG LHIVVPLDPV QDWSEVKSFS QAIARHLATL 750
    LPSHFSAVSG PKNRVGRIFI DYLRNSRGAS TVAPYSVRAR EGLPVSVPIH 800
    RDELADLKGA NLWTVRNLLE RLQELGDDDP WAAIGKTRQR LTKKIRDRLN 850
    A 851
    Length:851
    Mass (Da):94,475
    Last modified:May 29, 2007 - v1
    Checksum:iB7863640D08E647E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000304 Genomic DNA. Translation: ABP79795.1.
    RefSeqiYP_001172637.1. NC_009434.1.

    Genome annotation databases

    EnsemblBacteriaiABP79795; ABP79795; PST_2130.
    GeneIDi5098213.
    KEGGipsa:PST_2130.
    PATRICi19964753. VBIPseStu31643_2140.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000304 Genomic DNA. Translation: ABP79795.1 .
    RefSeqi YP_001172637.1. NC_009434.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 379731.PST_2130.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABP79795 ; ABP79795 ; PST_2130 .
    GeneIDi 5098213.
    KEGGi psa:PST_2130.
    PATRICi 19964753. VBIPseStu31643_2140.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SACDMAL.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci PSTU379731:GJER-2128-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the metabolically versatile and root-associated nitrogen-fixing bacterium Pseudomonas stutzeri A1501."
      Yan Y., Yang J., Dou Y., Ping S., Chen M., Yao Z., Li H., Lu W., Zhang W., Peng J., Liu W., He S., Geng L., Zhang X., Yang F., Li D., Lin Z., Wang Y.
      , Elmerich C., Lin M., Jin Q.
      Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: A1501Imported.

    Entry informationi

    Entry nameiA4VLE4_PSEU5
    AccessioniPrimary (citable) accession number: A4VLE4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 29, 2007
    Last sequence update: May 29, 2007
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3