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A4VLE4

- A4VLE4_PSEU5

UniProt

A4VLE4 - A4VLE4_PSEU5

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Protein
Submitted name:

DNA ligase, ATP-dependent, putative

Gene

PST_2130

Organism
Pseudomonas stutzeri (strain A1501)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPSTU379731:GJER-2128-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase, ATP-dependent, putativeImported
Gene namesi
Ordered Locus Names:PST_2130Imported
OrganismiPseudomonas stutzeri (strain A1501)Imported
Taxonomic identifieri379731 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000233: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi379731.PST_2130.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSACDMAL.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4VLE4-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MALEDYQRMR DFAATPEPAG KARPKPRKSQ ALQYCIQKHD ATRLHYDFRL
60 70 80 90 100
ELDGTLKSWA IPKGPSLDPG VRRLAVHVED HPLEYATFEG NIPEGHYGAG
110 120 130 140 150
DVIVWDRGVW TPQGDPQEGY RKGKLKFSLE GEKLAGSWNL VRTQMDGKKE
160 170 180 190 200
QWFLIKSRDE AAREESEYDI VTAEPDSVLS DRTLVPRKRG AKARVAETPP
210 220 230 240 250
APVKAPAKKR TPARRKAKVA LEGAVPAELP ERFKPQLATL VDTVPVGDWR
260 270 280 290 300
YEIKFDGYRM LARIDAGEVR LFTRNGHDWT AKMPQQAAAL AGLGLESGWL
310 320 330 340 350
DGEVVVPNEE GTPDFQALQN AFEAGRSGSI LYYLFDMPYL NGMDLREVAL
360 370 380 390 400
EQRRAALREV LERSDSELLR FSEDFTEQPD SILESACQMK LEGLIGKRAG
410 420 430 440 450
STYTSRRSSS WVKIKCSNRQ EFIIVGYTQP KGTRTGFGAL LLGLHDDKGE
460 470 480 490 500
LRYAGKVGTG FNHATLQSLH KKLKKLETDK SPLAKAPPAA DARGAQWLKP
510 520 530 540 550
ELMCEVAYAE MTRQGVVRHS VFHGLRTDKP AEAITHERAK PVARATPNVA
560 570 580 590 600
GKADPLGSGR IKISNPERVI DPSSGITKIE LARFYAQIAP WALPQLQNRP
610 620 630 640 650
LALVRAPEGI TGELFFQKHA DKLAIPHITQ LDPALDPKHG ALLVIDSAEA
660 670 680 690 700
LVGAAQMGTI ELHSWNAVAP DLEHPDRFVL DLDPDPALPW KRMLEATQLT
710 720 730 740 750
QTLLDEIGLA SFLKTSGGKG LHIVVPLDPV QDWSEVKSFS QAIARHLATL
760 770 780 790 800
LPSHFSAVSG PKNRVGRIFI DYLRNSRGAS TVAPYSVRAR EGLPVSVPIH
810 820 830 840 850
RDELADLKGA NLWTVRNLLE RLQELGDDDP WAAIGKTRQR LTKKIRDRLN

A
Length:851
Mass (Da):94,475
Last modified:May 29, 2007 - v1
Checksum:iB7863640D08E647E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000304 Genomic DNA. Translation: ABP79795.1.
RefSeqiYP_001172637.1. NC_009434.1.

Genome annotation databases

EnsemblBacteriaiABP79795; ABP79795; PST_2130.
GeneIDi5098213.
KEGGipsa:PST_2130.
PATRICi19964753. VBIPseStu31643_2140.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000304 Genomic DNA. Translation: ABP79795.1 .
RefSeqi YP_001172637.1. NC_009434.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 379731.PST_2130.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABP79795 ; ABP79795 ; PST_2130 .
GeneIDi 5098213.
KEGGi psa:PST_2130.
PATRICi 19964753. VBIPseStu31643_2140.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi SACDMAL.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci PSTU379731:GJER-2128-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the metabolically versatile and root-associated nitrogen-fixing bacterium Pseudomonas stutzeri A1501."
    Yan Y., Yang J., Dou Y., Ping S., Chen M., Yao Z., Li H., Lu W., Zhang W., Peng J., Liu W., He S., Geng L., Zhang X., Yang F., Li D., Lin Z., Wang Y.
    , Elmerich C., Lin M., Jin Q.
    Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: A1501Imported.

Entry informationi

Entry nameiA4VLE4_PSEU5
AccessioniPrimary (citable) accession number: A4VLE4
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: October 1, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3