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A4VLE4 (A4VLE4_PSEU5) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA ligase, ATP-dependent, putative EMBL ABP79795.1
Gene names
Ordered Locus Names:PST_2130
OrganismPseudomonas stutzeri (strain A1501) [Complete proteome] [HAMAP] EMBL ABP79795.1
Taxonomic identifier379731 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas ›

Protein attributes

Sequence length851 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABP79795.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

DNA primase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A4VLE4 [UniParc].

Last modified May 29, 2007. Version 1.
Checksum: B7863640D08E647E

FASTA85194,475
        10         20         30         40         50         60 
MALEDYQRMR DFAATPEPAG KARPKPRKSQ ALQYCIQKHD ATRLHYDFRL ELDGTLKSWA 

        70         80         90        100        110        120 
IPKGPSLDPG VRRLAVHVED HPLEYATFEG NIPEGHYGAG DVIVWDRGVW TPQGDPQEGY 

       130        140        150        160        170        180 
RKGKLKFSLE GEKLAGSWNL VRTQMDGKKE QWFLIKSRDE AAREESEYDI VTAEPDSVLS 

       190        200        210        220        230        240 
DRTLVPRKRG AKARVAETPP APVKAPAKKR TPARRKAKVA LEGAVPAELP ERFKPQLATL 

       250        260        270        280        290        300 
VDTVPVGDWR YEIKFDGYRM LARIDAGEVR LFTRNGHDWT AKMPQQAAAL AGLGLESGWL 

       310        320        330        340        350        360 
DGEVVVPNEE GTPDFQALQN AFEAGRSGSI LYYLFDMPYL NGMDLREVAL EQRRAALREV 

       370        380        390        400        410        420 
LERSDSELLR FSEDFTEQPD SILESACQMK LEGLIGKRAG STYTSRRSSS WVKIKCSNRQ 

       430        440        450        460        470        480 
EFIIVGYTQP KGTRTGFGAL LLGLHDDKGE LRYAGKVGTG FNHATLQSLH KKLKKLETDK 

       490        500        510        520        530        540 
SPLAKAPPAA DARGAQWLKP ELMCEVAYAE MTRQGVVRHS VFHGLRTDKP AEAITHERAK 

       550        560        570        580        590        600 
PVARATPNVA GKADPLGSGR IKISNPERVI DPSSGITKIE LARFYAQIAP WALPQLQNRP 

       610        620        630        640        650        660 
LALVRAPEGI TGELFFQKHA DKLAIPHITQ LDPALDPKHG ALLVIDSAEA LVGAAQMGTI 

       670        680        690        700        710        720 
ELHSWNAVAP DLEHPDRFVL DLDPDPALPW KRMLEATQLT QTLLDEIGLA SFLKTSGGKG 

       730        740        750        760        770        780 
LHIVVPLDPV QDWSEVKSFS QAIARHLATL LPSHFSAVSG PKNRVGRIFI DYLRNSRGAS 

       790        800        810        820        830        840 
TVAPYSVRAR EGLPVSVPIH RDELADLKGA NLWTVRNLLE RLQELGDDDP WAAIGKTRQR 

       850 
LTKKIRDRLN A

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References

[1]"Complete genome sequence of the metabolically versatile and root-associated nitrogen-fixing bacterium Pseudomonas stutzeri A1501."
Yan Y., Yang J., Dou Y., Ping S., Chen M., Yao Z., Li H., Lu W., Zhang W., Peng J., Liu W., He S., Geng L., Zhang X., Yang F., Li D., Lin Z., Wang Y. expand/collapse author list , Elmerich C., Lin M., Jin Q.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: A1501.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000304 Genomic DNA. Translation: ABP79795.1.
RefSeqYP_001172637.1. NC_009434.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING379731.PST_2130.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABP79795; ABP79795; PST_2130.
GeneID5098213.
KEGGpsa:PST_2130.
PATRIC19964753. VBIPseStu31643_2140.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMALVAECEF.
ProtClustDBPRK05972.

Enzyme and pathway databases

BioCycPSTU379731:GJER-2128-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA4VLE4_PSEU5
AccessionPrimary (citable) accession number: A4VLE4
Entry history
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: May 1, 2013
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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