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A4VKC3 (A4VKC3_PSEU5) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 41. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Choline dehydrogenase HAMAP MF_00750
Short name=CDH HAMAP MF_00750
Short name=CHD HAMAP MF_00750
EC=1.1.99.1 HAMAP MF_00750
Gene names
Name:betA HAMAP MF_00750 EMBL ABP79424.1
Ordered Locus Names:PST_1746
OrganismPseudomonas stutzeri (strain A1501) [Complete proteome] [HAMAP]
Taxonomic identifier379731 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas

Protein attributes

Sequence length557 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine By similarity. HAMAP MF_00750 SAAS SAAS007867

Catalytic activity

Choline + acceptor = betaine aldehyde + reduced acceptor. HAMAP MF_00750 RuleBase RU003969 SAAS SAAS007867

Cofactor

FAD By similarity. HAMAP MF_00750 SAAS SAAS007867 RuleBase RU003968

Pathway

Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine aldehyde from choline (cytochrome c reductase route): step 1/1. HAMAP MF_00750 RuleBase RU003969 SAAS SAAS007867

Sequence similarities

Belongs to the GMC oxidoreductase family. HAMAP MF_00750 RuleBase RU003968

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding4 – 3330FAD By similarity HAMAP MF_00750

Sites

Active site4721 By similarity HAMAP MF_00750

Sequences

Sequence LengthMass (Da)Tools
A4VKC3 [UniParc].

Last modified May 29, 2007. Version 1.
Checksum: 871C63B239E9707D

FASTA55761,611
        10         20         30         40         50         60 
MEYDYIVIGA GSAGNVLAAR LTEDAEVSVL LLEAGGPDYR LDFRTQMPAA LAYPLQGTRY 

        70         80         90        100        110        120 
NWAYKTDPEP HMNNRRMDCG RGKGLGGSSL INGMCYIRGN ALDYDNWAKA PGLEDWTYLD 

       130        140        150        160        170        180 
CLPYFRKAES RDIGPNDYHG GDGPVSVTTP KADNNELFHA MVEAGVQAGY PRTDDLNGYQ 

       190        200        210        220        230        240 
QEGFGPMDRT VTPQGRRAST ARGYLDQAKE RPNLTIHTHA VTDRVLFEGK RAVGVRYLRG 

       250        260        270        280        290        300 
REQPHVARAR REVLLCGGAI ASPQILQRSG VGPGALLKKL GVTLVQELPG VGQNLQDHLE 

       310        320        330        340        350        360 
MYLQFECLKP VSLYPALKWW NQPAIGAEWL FLGSGIGASN QFEAGGFIRS SDEFEWPNIQ 

       370        380        390        400        410        420 
FHFLPVAVSY NGSNAHDGHS FQAHVGSMRS PSRGRIEIRS TDPRVDPSIL FNYMAHEQDW 

       430        440        450        460        470        480 
REFRDAIRIT REIIAQPALD PYRGRELNPG VEAQSDAELD AFVREHAETA YHPSCSCRMG 

       490        500        510        520        530        540 
TDDMAVVDGQ GRVHGVDGLR VVDASIMPQI ITGNLNATTI MLAEKIADRI RGREPLPRST 

       550 
ASYYVANGAP VRQPPQR

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References

[1]"Complete genome sequence of the metabolically versatile and root-associated nitrogen-fixing bacterium Pseudomonas stutzeri A1501."
Yan Y., Yang J., Dou Y., Ping S., Chen M., Yao Z., Li H., Lu W., Zhang W., Peng J., Liu W., He S., Geng L., Zhang X., Yang F., Li D., Lin Z., Wang Y. expand/collapse author list , Elmerich C., Lin M., Jin Q.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000304 Genomic DNA. Translation: ABP79424.1.
RefSeqYP_001172266.1. NC_009434.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGA4VKC3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5097830.
GenomeReviewsGene locus PST_1746 in contig CP000304_GR.
KEGGpsa:PST_1746.
PATRIC19963963. VBIPseStu31643_1756.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2303.
HOGENOMHBG734713.
OMAEISPGAH.
PhylomeDBA4VKC3.
ProtClustDBPRK02106.

Enzyme and pathway databases

BioCycPSTU379731:PST_1746-MONOMER.

Family and domain databases

HAMAPMF_00750. Choline_dehydrogen.
[Tree]
InterProIPR011533. Choline_dehydrogenase.
IPR012132. GMC_OxRdtase.
IPR000172. GMC_OxRdtase_N.
IPR007867. GMC_OxRtase_C.
[Graphical view]
KOK00108.
PfamPF05199. GMC_oxred_C. 1 hit.
PF00732. GMC_oxred_N. 1 hit.
[Graphical view]
PIRSFPIRSF000137. Alcohol_oxidase. 1 hit.
TIGRFAMsTIGR01810. BetA. 1 hit.
PROSITEPS00623. GMC_OXRED_1. 1 hit.
PS00624. GMC_OXRED_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA4VKC3_PSEU5
AccessionPrimary (citable) accession number: A4VKC3
Entry history
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: December 14, 2011
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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