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A4VIC7 (A4VIC7_PSEU5) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 41. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
RNA polymerase sigma-54 factor PIRNR PIRNR000774
Gene names
Name:rpoN EMBL ABP78728.1
Ordered Locus Names:PST_1031 EMBL ABP78728.1
OrganismPseudomonas stutzeri (strain A1501) [Complete proteome] [HAMAP] EMBL ABP78728.1
Taxonomic identifier379731 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length457 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. PIRNR PIRNR000774

Sequence similarities

Belongs to the sigma-54 factor family. PIRNR PIRNR000774

Sequences

Sequence LengthMass (Da)Tools
A4VIC7 [UniParc].

Last modified May 29, 2007. Version 1.
Checksum: D6F5833CB2AB38B4

FASTA45751,757
        10         20         30         40         50         60 
MLEREEDGDD FDGSDPMAEA VDRSSDAGSE KISTQESTYE EPSHSGEGLD EADWGERIPS 

        70         80         90        100        110        120 
ELPVDTAWED IYQTSASSLP SNDDDEWDFT SRTSSGVSLQ SHLLWQLNLA PMSDTDRLIA 

       130        140        150        160        170        180 
TTLIDCINDQ GYLEESLQEI VDSFDPELEI ELDEVEVVLR RVQQFEPAGI GARDLRECLL 

       190        200        210        220        230        240 
LQLRQLPDRT PWLSEAQRLV SDHLDLLGSR DYSLLMRRMK LKEDELRQVI ELIQSLNPRP 

       250        260        270        280        290        300 
GSQIEASEPE YVVPDVIVRK HNDRWLVELN QDAMPRLRVN AQYASFVKRA DSSADNTFMR 

       310        320        330        340        350        360 
NQLQEARWFI KSLLSRNETL MKVATQIVEH QRAFLEHGDE AMKPLVLHDI AEAVGMHEST 

       370        380        390        400        410        420 
ISRVTTQKYM HTPRGIYELK YFFSSHVSTA EGGECSSTAI RAIIKKLVAA ENPKKPLSDS 

       430        440        450 
KIAGLLEAQG IQVARRTVAK YRESLGIAPS SERKRLL 

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References

[1]"Complete genome sequence of the metabolically versatile and root-associated nitrogen-fixing bacterium Pseudomonas stutzeri A1501."
Yan Y., Yang J., Dou Y., Ping S., Chen M., Yao Z., Li H., Lu W., Zhang W., Peng J., Liu W., He S., Geng L., Zhang X., Yang F., Li D., Lin Z., Wang Y. expand/collapse author list , Elmerich C., Lin M., Jin Q.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: A1501.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000304 Genomic DNA. Translation: ABP78728.1.
RefSeqYP_001171570.1. NC_009434.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING379731.PST_1031.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABP78728; ABP78728; PST_1031.
GeneID5098701.
KEGGpsa:PST_1031.
PATRIC19962483. VBIPseStu31643_1028.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1508.
HOGENOMHOG000071905.
KOK03092.
OMATQKFMHT.
OrthoDBEOG60CWN7.

Enzyme and pathway databases

BioCycPSTU379731:GJER-1032-MONOMER.

Family and domain databases

InterProIPR000394. RNA_pol_sigma_54.
IPR007046. RNA_pol_sigma_54_core-bd.
IPR007634. RNA_pol_sigma_54_DNA-bd.
[Graphical view]
PfamPF04963. Sigma54_CBD. 1 hit.
PF04552. Sigma54_DBD. 1 hit.
[Graphical view]
PIRSFPIRSF000774. RpoN. 1 hit.
PRINTSPR00045. SIGMA54FCT.
TIGRFAMsTIGR02395. rpoN_sigma. 1 hit.
PROSITEPS00717. SIGMA54_1. 1 hit.
PS00718. SIGMA54_2. 1 hit.
PS50044. SIGMA54_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA4VIC7_PSEU5
AccessionPrimary (citable) accession number: A4VIC7
Entry history
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: May 14, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)