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A4VIC7

- A4VIC7_PSEU5

UniProt

A4VIC7 - A4VIC7_PSEU5

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Protein

RNA polymerase sigma-54 factor

Gene

rpoN

Organism
Pseudomonas stutzeri (strain A1501)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.UniRule annotation

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. DNA-directed RNA polymerase activity Source: UniProtKB-KW
  3. sequence-specific DNA binding transcription factor activity Source: InterPro
  4. sigma factor activity Source: UniProtKB-KW

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

NucleotidyltransferaseUniRule annotation, Sigma factorUniRule annotation, Transferase

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingUniRule annotation

Enzyme and pathway databases

BioCyciPSTU379731:GJER-1032-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma-54 factorUniRule annotation
Gene namesi
Name:rpoNImported
Ordered Locus Names:PST_1031Imported
OrganismiPseudomonas stutzeri (strain A1501)Imported
Taxonomic identifieri379731 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000233: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymeraseUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi379731.PST_1031.

Family & Domainsi

Sequence similaritiesi

Belongs to the sigma-54 factor family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1508.
HOGENOMiHOG000071905.
KOiK03092.
OMAiTQKFMHT.
OrthoDBiEOG60CWN7.

Family and domain databases

InterProiIPR000394. RNA_pol_sigma_54.
IPR007046. RNA_pol_sigma_54_core-bd.
IPR007634. RNA_pol_sigma_54_DNA-bd.
[Graphical view]
PfamiPF04963. Sigma54_CBD. 1 hit.
PF04552. Sigma54_DBD. 1 hit.
[Graphical view]
PIRSFiPIRSF000774. RpoN. 1 hit.
PRINTSiPR00045. SIGMA54FCT.
TIGRFAMsiTIGR02395. rpoN_sigma. 1 hit.
PROSITEiPS00717. SIGMA54_1. 1 hit.
PS00718. SIGMA54_2. 1 hit.
PS50044. SIGMA54_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4VIC7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MLEREEDGDD FDGSDPMAEA VDRSSDAGSE KISTQESTYE EPSHSGEGLD
60 70 80 90 100
EADWGERIPS ELPVDTAWED IYQTSASSLP SNDDDEWDFT SRTSSGVSLQ
110 120 130 140 150
SHLLWQLNLA PMSDTDRLIA TTLIDCINDQ GYLEESLQEI VDSFDPELEI
160 170 180 190 200
ELDEVEVVLR RVQQFEPAGI GARDLRECLL LQLRQLPDRT PWLSEAQRLV
210 220 230 240 250
SDHLDLLGSR DYSLLMRRMK LKEDELRQVI ELIQSLNPRP GSQIEASEPE
260 270 280 290 300
YVVPDVIVRK HNDRWLVELN QDAMPRLRVN AQYASFVKRA DSSADNTFMR
310 320 330 340 350
NQLQEARWFI KSLLSRNETL MKVATQIVEH QRAFLEHGDE AMKPLVLHDI
360 370 380 390 400
AEAVGMHEST ISRVTTQKYM HTPRGIYELK YFFSSHVSTA EGGECSSTAI
410 420 430 440 450
RAIIKKLVAA ENPKKPLSDS KIAGLLEAQG IQVARRTVAK YRESLGIAPS

SERKRLL
Length:457
Mass (Da):51,757
Last modified:May 29, 2007 - v1
Checksum:iD6F5833CB2AB38B4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000304 Genomic DNA. Translation: ABP78728.1.
RefSeqiWP_011912219.1. NC_009434.1.
YP_001171570.1. NC_009434.1.

Genome annotation databases

EnsemblBacteriaiABP78728; ABP78728; PST_1031.
GeneIDi5098701.
KEGGipsa:PST_1031.
PATRICi19962483. VBIPseStu31643_1028.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000304 Genomic DNA. Translation: ABP78728.1 .
RefSeqi WP_011912219.1. NC_009434.1.
YP_001171570.1. NC_009434.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 379731.PST_1031.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABP78728 ; ABP78728 ; PST_1031 .
GeneIDi 5098701.
KEGGi psa:PST_1031.
PATRICi 19962483. VBIPseStu31643_1028.

Phylogenomic databases

eggNOGi COG1508.
HOGENOMi HOG000071905.
KOi K03092.
OMAi TQKFMHT.
OrthoDBi EOG60CWN7.

Enzyme and pathway databases

BioCyci PSTU379731:GJER-1032-MONOMER.

Family and domain databases

InterProi IPR000394. RNA_pol_sigma_54.
IPR007046. RNA_pol_sigma_54_core-bd.
IPR007634. RNA_pol_sigma_54_DNA-bd.
[Graphical view ]
Pfami PF04963. Sigma54_CBD. 1 hit.
PF04552. Sigma54_DBD. 1 hit.
[Graphical view ]
PIRSFi PIRSF000774. RpoN. 1 hit.
PRINTSi PR00045. SIGMA54FCT.
TIGRFAMsi TIGR02395. rpoN_sigma. 1 hit.
PROSITEi PS00717. SIGMA54_1. 1 hit.
PS00718. SIGMA54_2. 1 hit.
PS50044. SIGMA54_3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the metabolically versatile and root-associated nitrogen-fixing bacterium Pseudomonas stutzeri A1501."
    Yan Y., Yang J., Dou Y., Ping S., Chen M., Yao Z., Li H., Lu W., Zhang W., Peng J., Liu W., He S., Geng L., Zhang X., Yang F., Li D., Lin Z., Wang Y.
    , Elmerich C., Lin M., Jin Q.
    Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: A1501Imported.

Entry informationi

Entry nameiA4VIC7_PSEU5
AccessioniPrimary (citable) accession number: A4VIC7
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: October 1, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3