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Protein

RNA polymerase sigma-54 factor

Gene

rpoN

Organism
Pseudomonas stutzeri (strain A1501)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.UniRule annotation

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. DNA-directed RNA polymerase activity Source: UniProtKB-KW
  3. sequence-specific DNA binding transcription factor activity Source: InterPro
  4. sigma factor activity Source: UniProtKB-KW

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

NucleotidyltransferaseUniRule annotation, Sigma factorUniRule annotation, Transferase

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingUniRule annotation

Enzyme and pathway databases

BioCyciPSTU379731:GJER-1032-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma-54 factorUniRule annotation
Gene namesi
Name:rpoNImported
Ordered Locus Names:PST_1031Imported
OrganismiPseudomonas stutzeri (strain A1501)Imported
Taxonomic identifieri379731 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000233 Componenti: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymeraseUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi379731.PST_1031.

Family & Domainsi

Sequence similaritiesi

Belongs to the sigma-54 factor family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1508.
HOGENOMiHOG000071905.
KOiK03092.
OMAiKVTRCIV.
OrthoDBiEOG60CWN7.

Family and domain databases

InterProiIPR000394. RNA_pol_sigma_54.
IPR007046. RNA_pol_sigma_54_core-bd.
IPR007634. RNA_pol_sigma_54_DNA-bd.
[Graphical view]
PfamiPF04963. Sigma54_CBD. 1 hit.
PF04552. Sigma54_DBD. 1 hit.
[Graphical view]
PIRSFiPIRSF000774. RpoN. 1 hit.
PRINTSiPR00045. SIGMA54FCT.
TIGRFAMsiTIGR02395. rpoN_sigma. 1 hit.
PROSITEiPS00717. SIGMA54_1. 1 hit.
PS00718. SIGMA54_2. 1 hit.
PS50044. SIGMA54_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4VIC7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLEREEDGDD FDGSDPMAEA VDRSSDAGSE KISTQESTYE EPSHSGEGLD
60 70 80 90 100
EADWGERIPS ELPVDTAWED IYQTSASSLP SNDDDEWDFT SRTSSGVSLQ
110 120 130 140 150
SHLLWQLNLA PMSDTDRLIA TTLIDCINDQ GYLEESLQEI VDSFDPELEI
160 170 180 190 200
ELDEVEVVLR RVQQFEPAGI GARDLRECLL LQLRQLPDRT PWLSEAQRLV
210 220 230 240 250
SDHLDLLGSR DYSLLMRRMK LKEDELRQVI ELIQSLNPRP GSQIEASEPE
260 270 280 290 300
YVVPDVIVRK HNDRWLVELN QDAMPRLRVN AQYASFVKRA DSSADNTFMR
310 320 330 340 350
NQLQEARWFI KSLLSRNETL MKVATQIVEH QRAFLEHGDE AMKPLVLHDI
360 370 380 390 400
AEAVGMHEST ISRVTTQKYM HTPRGIYELK YFFSSHVSTA EGGECSSTAI
410 420 430 440 450
RAIIKKLVAA ENPKKPLSDS KIAGLLEAQG IQVARRTVAK YRESLGIAPS

SERKRLL
Length:457
Mass (Da):51,757
Last modified:May 29, 2007 - v1
Checksum:iD6F5833CB2AB38B4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000304 Genomic DNA. Translation: ABP78728.1.
RefSeqiYP_001171570.1. NC_009434.1.

Genome annotation databases

EnsemblBacteriaiABP78728; ABP78728; PST_1031.
KEGGipsa:PST_1031.
PATRICi19962483. VBIPseStu31643_1028.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000304 Genomic DNA. Translation: ABP78728.1.
RefSeqiYP_001171570.1. NC_009434.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi379731.PST_1031.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABP78728; ABP78728; PST_1031.
KEGGipsa:PST_1031.
PATRICi19962483. VBIPseStu31643_1028.

Phylogenomic databases

eggNOGiCOG1508.
HOGENOMiHOG000071905.
KOiK03092.
OMAiKVTRCIV.
OrthoDBiEOG60CWN7.

Enzyme and pathway databases

BioCyciPSTU379731:GJER-1032-MONOMER.

Family and domain databases

InterProiIPR000394. RNA_pol_sigma_54.
IPR007046. RNA_pol_sigma_54_core-bd.
IPR007634. RNA_pol_sigma_54_DNA-bd.
[Graphical view]
PfamiPF04963. Sigma54_CBD. 1 hit.
PF04552. Sigma54_DBD. 1 hit.
[Graphical view]
PIRSFiPIRSF000774. RpoN. 1 hit.
PRINTSiPR00045. SIGMA54FCT.
TIGRFAMsiTIGR02395. rpoN_sigma. 1 hit.
PROSITEiPS00717. SIGMA54_1. 1 hit.
PS00718. SIGMA54_2. 1 hit.
PS50044. SIGMA54_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of the metabolically versatile and root-associated nitrogen-fixing bacterium Pseudomonas stutzeri A1501."
    Yan Y., Yang J., Dou Y., Ping S., Chen M., Yao Z., Li H., Lu W., Zhang W., Peng J., Liu W., He S., Geng L., Zhang X., Yang F., Li D., Lin Z., Wang Y.
    , Elmerich C., Lin M., Jin Q.
    Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: A1501Imported.

Entry informationi

Entry nameiA4VIC7_PSEU5
AccessioniPrimary (citable) accession number: A4VIC7
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: April 29, 2015
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.