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A4VIC7

- A4VIC7_PSEU5

UniProt

A4VIC7 - A4VIC7_PSEU5

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Protein
RNA polymerase sigma-54 factor
Gene
rpoN, PST_1031
Organism
Pseudomonas stutzeri (strain A1501)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity.UniRule annotation

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. DNA-directed RNA polymerase activity Source: UniProtKB-KW
  3. sequence-specific DNA binding transcription factor activity Source: InterPro
  4. sigma factor activity Source: UniProtKB-KW

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

NucleotidyltransferaseUniRule annotation, Sigma factorUniRule annotation, Transferase

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingUniRule annotation

Enzyme and pathway databases

BioCyciPSTU379731:GJER-1032-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma-54 factorUniRule annotation
Gene namesi
Name:rpoNImported
Ordered Locus Names:PST_1031Imported
OrganismiPseudomonas stutzeri (strain A1501)Imported
Taxonomic identifieri379731 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000233: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymeraseUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi379731.PST_1031.

Family & Domainsi

Sequence similaritiesi

Belongs to the sigma-54 factor family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1508.
HOGENOMiHOG000071905.
KOiK03092.
OMAiTQKFMHT.
OrthoDBiEOG60CWN7.

Family and domain databases

InterProiIPR000394. RNA_pol_sigma_54.
IPR007046. RNA_pol_sigma_54_core-bd.
IPR007634. RNA_pol_sigma_54_DNA-bd.
[Graphical view]
PfamiPF04963. Sigma54_CBD. 1 hit.
PF04552. Sigma54_DBD. 1 hit.
[Graphical view]
PIRSFiPIRSF000774. RpoN. 1 hit.
PRINTSiPR00045. SIGMA54FCT.
TIGRFAMsiTIGR02395. rpoN_sigma. 1 hit.
PROSITEiPS00717. SIGMA54_1. 1 hit.
PS00718. SIGMA54_2. 1 hit.
PS50044. SIGMA54_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4VIC7-1 [UniParc]FASTAAdd to Basket

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MLEREEDGDD FDGSDPMAEA VDRSSDAGSE KISTQESTYE EPSHSGEGLD    50
EADWGERIPS ELPVDTAWED IYQTSASSLP SNDDDEWDFT SRTSSGVSLQ 100
SHLLWQLNLA PMSDTDRLIA TTLIDCINDQ GYLEESLQEI VDSFDPELEI 150
ELDEVEVVLR RVQQFEPAGI GARDLRECLL LQLRQLPDRT PWLSEAQRLV 200
SDHLDLLGSR DYSLLMRRMK LKEDELRQVI ELIQSLNPRP GSQIEASEPE 250
YVVPDVIVRK HNDRWLVELN QDAMPRLRVN AQYASFVKRA DSSADNTFMR 300
NQLQEARWFI KSLLSRNETL MKVATQIVEH QRAFLEHGDE AMKPLVLHDI 350
AEAVGMHEST ISRVTTQKYM HTPRGIYELK YFFSSHVSTA EGGECSSTAI 400
RAIIKKLVAA ENPKKPLSDS KIAGLLEAQG IQVARRTVAK YRESLGIAPS 450
SERKRLL 457
Length:457
Mass (Da):51,757
Last modified:May 29, 2007 - v1
Checksum:iD6F5833CB2AB38B4
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000304 Genomic DNA. Translation: ABP78728.1.
RefSeqiWP_011912219.1. NC_009434.1.
YP_001171570.1. NC_009434.1.

Genome annotation databases

EnsemblBacteriaiABP78728; ABP78728; PST_1031.
GeneIDi5098701.
KEGGipsa:PST_1031.
PATRICi19962483. VBIPseStu31643_1028.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000304 Genomic DNA. Translation: ABP78728.1 .
RefSeqi WP_011912219.1. NC_009434.1.
YP_001171570.1. NC_009434.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 379731.PST_1031.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABP78728 ; ABP78728 ; PST_1031 .
GeneIDi 5098701.
KEGGi psa:PST_1031.
PATRICi 19962483. VBIPseStu31643_1028.

Phylogenomic databases

eggNOGi COG1508.
HOGENOMi HOG000071905.
KOi K03092.
OMAi TQKFMHT.
OrthoDBi EOG60CWN7.

Enzyme and pathway databases

BioCyci PSTU379731:GJER-1032-MONOMER.

Family and domain databases

InterProi IPR000394. RNA_pol_sigma_54.
IPR007046. RNA_pol_sigma_54_core-bd.
IPR007634. RNA_pol_sigma_54_DNA-bd.
[Graphical view ]
Pfami PF04963. Sigma54_CBD. 1 hit.
PF04552. Sigma54_DBD. 1 hit.
[Graphical view ]
PIRSFi PIRSF000774. RpoN. 1 hit.
PRINTSi PR00045. SIGMA54FCT.
TIGRFAMsi TIGR02395. rpoN_sigma. 1 hit.
PROSITEi PS00717. SIGMA54_1. 1 hit.
PS00718. SIGMA54_2. 1 hit.
PS50044. SIGMA54_3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the metabolically versatile and root-associated nitrogen-fixing bacterium Pseudomonas stutzeri A1501."
    Yan Y., Yang J., Dou Y., Ping S., Chen M., Yao Z., Li H., Lu W., Zhang W., Peng J., Liu W., He S., Geng L., Zhang X., Yang F., Li D., Lin Z., Wang Y.
    , Elmerich C., Lin M., Jin Q.
    Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: A1501.

Entry informationi

Entry nameiA4VIC7_PSEU5
AccessioniPrimary (citable) accession number: A4VIC7
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: September 3, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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