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Protein

RNA polymerase sigma-54 factor

Gene

rpoN

Organism
Pseudomonas stutzeri (strain A1501)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotation, NucleotidyltransferaseUniRule annotation, Sigma factorUniRule annotation, Transferase
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma-54 factorUniRule annotation
Gene namesi
Name:rpoNImported
Ordered Locus Names:PST_1031Imported
OrganismiPseudomonas stutzeri (strain A1501)Imported
Taxonomic identifieri379731 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000000233 Componenti: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymeraseUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi379731.PST_1031

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini90 – 283Sigma54_CBDInterPro annotationAdd BLAST194
Domaini297 – 455Sigma54_DBDInterPro annotationAdd BLAST159

Sequence similaritiesi

Belongs to the sigma-54 factor family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105DTW Bacteria
COG1508 LUCA
HOGENOMiHOG000071905
KOiK03092
OMAiVTTQKFM
OrthoDBiPOG091H02EW

Family and domain databases

Gene3Di1.10.10.1330, 1 hit
InterProiView protein in InterPro
IPR000394 RNA_pol_sigma_54
IPR007046 RNA_pol_sigma_54_core-bd
IPR007634 RNA_pol_sigma_54_DNA-bd
IPR038709 RpoN_core-bd_sf
PANTHERiPTHR32248 PTHR32248, 1 hit
PfamiView protein in Pfam
PF04963 Sigma54_CBD, 1 hit
PF04552 Sigma54_DBD, 1 hit
PIRSFiPIRSF000774 RpoN, 1 hit
PRINTSiPR00045 SIGMA54FCT
TIGRFAMsiTIGR02395 rpoN_sigma, 1 hit
PROSITEiView protein in PROSITE
PS00717 SIGMA54_1, 1 hit
PS00718 SIGMA54_2, 1 hit

Sequencei

Sequence statusi: Complete.

A4VIC7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLEREEDGDD FDGSDPMAEA VDRSSDAGSE KISTQESTYE EPSHSGEGLD
60 70 80 90 100
EADWGERIPS ELPVDTAWED IYQTSASSLP SNDDDEWDFT SRTSSGVSLQ
110 120 130 140 150
SHLLWQLNLA PMSDTDRLIA TTLIDCINDQ GYLEESLQEI VDSFDPELEI
160 170 180 190 200
ELDEVEVVLR RVQQFEPAGI GARDLRECLL LQLRQLPDRT PWLSEAQRLV
210 220 230 240 250
SDHLDLLGSR DYSLLMRRMK LKEDELRQVI ELIQSLNPRP GSQIEASEPE
260 270 280 290 300
YVVPDVIVRK HNDRWLVELN QDAMPRLRVN AQYASFVKRA DSSADNTFMR
310 320 330 340 350
NQLQEARWFI KSLLSRNETL MKVATQIVEH QRAFLEHGDE AMKPLVLHDI
360 370 380 390 400
AEAVGMHEST ISRVTTQKYM HTPRGIYELK YFFSSHVSTA EGGECSSTAI
410 420 430 440 450
RAIIKKLVAA ENPKKPLSDS KIAGLLEAQG IQVARRTVAK YRESLGIAPS

SERKRLL
Length:457
Mass (Da):51,757
Last modified:May 29, 2007 - v1
Checksum:iD6F5833CB2AB38B4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000304 Genomic DNA Translation: ABP78728.1

Genome annotation databases

EnsemblBacteriaiABP78728; ABP78728; PST_1031
KEGGipsa:PST_1031

Similar proteinsi

Entry informationi

Entry nameiA4VIC7_PSEU5
AccessioniPrimary (citable) accession number: A4VIC7
Entry historyiIntegrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: May 23, 2018
This is version 67 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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