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A4VIC7

- A4VIC7_PSEU5

UniProt

A4VIC7 - A4VIC7_PSEU5

Protein

RNA polymerase sigma-54 factor

Gene

rpoN

Organism
Pseudomonas stutzeri (strain A1501)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 43 (01 Oct 2014)
      Sequence version 1 (29 May 2007)
      Previous versions | rss
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    Functioni

    Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.UniRule annotation

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. DNA-directed RNA polymerase activity Source: UniProtKB-KW
    3. sequence-specific DNA binding transcription factor activity Source: InterPro
    4. sigma factor activity Source: UniProtKB-KW

    GO - Biological processi

    1. DNA-templated transcription, initiation Source: InterPro

    Keywords - Molecular functioni

    NucleotidyltransferaseUniRule annotation, Sigma factorUniRule annotation, Transferase

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-bindingUniRule annotation

    Enzyme and pathway databases

    BioCyciPSTU379731:GJER-1032-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    RNA polymerase sigma-54 factorUniRule annotation
    Gene namesi
    Name:rpoNImported
    Ordered Locus Names:PST_1031Imported
    OrganismiPseudomonas stutzeri (strain A1501)Imported
    Taxonomic identifieri379731 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000000233: Chromosome

    Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymeraseUniRule annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi379731.PST_1031.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the sigma-54 factor family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1508.
    HOGENOMiHOG000071905.
    KOiK03092.
    OMAiTQKFMHT.
    OrthoDBiEOG60CWN7.

    Family and domain databases

    InterProiIPR000394. RNA_pol_sigma_54.
    IPR007046. RNA_pol_sigma_54_core-bd.
    IPR007634. RNA_pol_sigma_54_DNA-bd.
    [Graphical view]
    PfamiPF04963. Sigma54_CBD. 1 hit.
    PF04552. Sigma54_DBD. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000774. RpoN. 1 hit.
    PRINTSiPR00045. SIGMA54FCT.
    TIGRFAMsiTIGR02395. rpoN_sigma. 1 hit.
    PROSITEiPS00717. SIGMA54_1. 1 hit.
    PS00718. SIGMA54_2. 1 hit.
    PS50044. SIGMA54_3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A4VIC7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLEREEDGDD FDGSDPMAEA VDRSSDAGSE KISTQESTYE EPSHSGEGLD    50
    EADWGERIPS ELPVDTAWED IYQTSASSLP SNDDDEWDFT SRTSSGVSLQ 100
    SHLLWQLNLA PMSDTDRLIA TTLIDCINDQ GYLEESLQEI VDSFDPELEI 150
    ELDEVEVVLR RVQQFEPAGI GARDLRECLL LQLRQLPDRT PWLSEAQRLV 200
    SDHLDLLGSR DYSLLMRRMK LKEDELRQVI ELIQSLNPRP GSQIEASEPE 250
    YVVPDVIVRK HNDRWLVELN QDAMPRLRVN AQYASFVKRA DSSADNTFMR 300
    NQLQEARWFI KSLLSRNETL MKVATQIVEH QRAFLEHGDE AMKPLVLHDI 350
    AEAVGMHEST ISRVTTQKYM HTPRGIYELK YFFSSHVSTA EGGECSSTAI 400
    RAIIKKLVAA ENPKKPLSDS KIAGLLEAQG IQVARRTVAK YRESLGIAPS 450
    SERKRLL 457
    Length:457
    Mass (Da):51,757
    Last modified:May 29, 2007 - v1
    Checksum:iD6F5833CB2AB38B4
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000304 Genomic DNA. Translation: ABP78728.1.
    RefSeqiWP_011912219.1. NC_009434.1.
    YP_001171570.1. NC_009434.1.

    Genome annotation databases

    EnsemblBacteriaiABP78728; ABP78728; PST_1031.
    GeneIDi5098701.
    KEGGipsa:PST_1031.
    PATRICi19962483. VBIPseStu31643_1028.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000304 Genomic DNA. Translation: ABP78728.1 .
    RefSeqi WP_011912219.1. NC_009434.1.
    YP_001171570.1. NC_009434.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 379731.PST_1031.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABP78728 ; ABP78728 ; PST_1031 .
    GeneIDi 5098701.
    KEGGi psa:PST_1031.
    PATRICi 19962483. VBIPseStu31643_1028.

    Phylogenomic databases

    eggNOGi COG1508.
    HOGENOMi HOG000071905.
    KOi K03092.
    OMAi TQKFMHT.
    OrthoDBi EOG60CWN7.

    Enzyme and pathway databases

    BioCyci PSTU379731:GJER-1032-MONOMER.

    Family and domain databases

    InterProi IPR000394. RNA_pol_sigma_54.
    IPR007046. RNA_pol_sigma_54_core-bd.
    IPR007634. RNA_pol_sigma_54_DNA-bd.
    [Graphical view ]
    Pfami PF04963. Sigma54_CBD. 1 hit.
    PF04552. Sigma54_DBD. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000774. RpoN. 1 hit.
    PRINTSi PR00045. SIGMA54FCT.
    TIGRFAMsi TIGR02395. rpoN_sigma. 1 hit.
    PROSITEi PS00717. SIGMA54_1. 1 hit.
    PS00718. SIGMA54_2. 1 hit.
    PS50044. SIGMA54_3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the metabolically versatile and root-associated nitrogen-fixing bacterium Pseudomonas stutzeri A1501."
      Yan Y., Yang J., Dou Y., Ping S., Chen M., Yao Z., Li H., Lu W., Zhang W., Peng J., Liu W., He S., Geng L., Zhang X., Yang F., Li D., Lin Z., Wang Y.
      , Elmerich C., Lin M., Jin Q.
      Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: A1501Imported.

    Entry informationi

    Entry nameiA4VIC7_PSEU5
    AccessioniPrimary (citable) accession number: A4VIC7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 29, 2007
    Last sequence update: May 29, 2007
    Last modified: October 1, 2014
    This is version 43 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3