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A4VHV6

- TYPH_PSEU5

UniProt

A4VHV6 - TYPH_PSEU5

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Protein

Putative thymidine phosphorylase

Gene

PST_0860

Organism
Pseudomonas stutzeri (strain A1501)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

Thymidine + phosphate = thymine + 2-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

GO - Molecular functioni

  1. phosphorylase activity Source: InterPro
  2. thymidine phosphorylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. pyrimidine nucleobase metabolic process Source: InterPro
  2. pyrimidine nucleoside metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Enzyme and pathway databases

BioCyciPSTU379731:GJER-861-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative thymidine phosphorylaseUniRule annotation (EC:2.4.2.4UniRule annotation)
Alternative name(s):
TdRPaseUniRule annotation
Gene namesi
Ordered Locus Names:PST_0860
OrganismiPseudomonas stutzeri (strain A1501)
Taxonomic identifieri379731 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000233: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 526526Putative thymidine phosphorylasePRO_0000314707Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi379731.PST_0860.

Structurei

3D structure databases

ProteinModelPortaliA4VHV6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0213.
HOGENOMiHOG000252767.
KOiK00758.
OrthoDBiEOG61ZTGG.

Family and domain databases

Gene3Di3.40.1030.10. 1 hit.
3.90.1170.30. 1 hit.
HAMAPiMF_00703. Thymid_phosp_2.
InterProiIPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
IPR013102. PYNP_C.
IPR000053. Pyrmidine_PPase.
IPR017872. Pyrmidine_PPase_CS.
IPR028579. Thym_Pase_Put.
IPR013466. Thymidine/AMP_Pase.
[Graphical view]
PANTHERiPTHR10515. PTHR10515. 1 hit.
PfamiPF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
PF07831. PYNP_C. 1 hit.
[Graphical view]
PIRSFiPIRSF000478. TP_PyNP. 1 hit.
SMARTiSM00941. PYNP_C. 1 hit.
[Graphical view]
SUPFAMiSSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
SSF54680. SSF54680. 1 hit.
TIGRFAMsiTIGR02645. ARCH_P_rylase. 1 hit.
PROSITEiPS00647. THYMID_PHOSPHORYLASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4VHV6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTSISSDTPL NGKAPVHLAL RRVAIDTYRE NVAYLHRDCA ACRAEGFQAL
60 70 80 90 100
AKVEIRVNGR RILASLNLVD DPSIVGCDEL GLSEDAFAQL GAEAGVPAAI
110 120 130 140 150
AQAEPAASIP ALHRKIAGER LNRDDFLAIM RDIAEHRYSK IELTAFVVAC
160 170 180 190 200
NQGELDREEV FFLTDAMIRV GRRLDWREHP VVDKHCIGGI PGNRTSMLVV
210 220 230 240 250
PIVAAHGMLC PKTSSRAITS PAGTADTMEV LANVELPFER LCEMVREERG
260 270 280 290 300
CLAWGGSSDL SPADDVLIAV ERPLSIDSPG QMVASILSKK IAAGSTHLLL
310 320 330 340 350
DIPIGPTAKV RSMAEAQRLR KLFEFVATRL GLTLDVVITD GRQPIGNGIG
360 370 380 390 400
PVLEARDVIQ VLQNDPAAPI DLRQKALRLA GRMLEFDPDV RGGDGYAIAR
410 420 430 440 450
DILDSGRALK KMRSIIAAQG GKPFDHNHPP LARLSFDVLA DCDAVVTGID
460 470 480 490 500
NLQLARIARL AGAPKVQGAG VDILRKLGEP VRAGDCLYRV YADFPADLAF
510 520
ARQATERASG VSLGSPEQVP TVFVEF
Length:526
Mass (Da):56,665
Last modified:January 15, 2008 - v2
Checksum:i8919244A6B4B3662
GO

Sequence cautioni

The sequence ABP78557.1 differs from that shown. Reason: Erroneous initiation.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000304 Genomic DNA. Translation: ABP78557.1. Different initiation.
RefSeqiYP_001171399.1. NC_009434.1.

Genome annotation databases

EnsemblBacteriaiABP78557; ABP78557; PST_0860.
GeneIDi5098530.
KEGGipsa:PST_0860.
PATRICi19962135. VBIPseStu31643_0854.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000304 Genomic DNA. Translation: ABP78557.1 . Different initiation.
RefSeqi YP_001171399.1. NC_009434.1.

3D structure databases

ProteinModelPortali A4VHV6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 379731.PST_0860.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABP78557 ; ABP78557 ; PST_0860 .
GeneIDi 5098530.
KEGGi psa:PST_0860.
PATRICi 19962135. VBIPseStu31643_0854.

Phylogenomic databases

eggNOGi COG0213.
HOGENOMi HOG000252767.
KOi K00758.
OrthoDBi EOG61ZTGG.

Enzyme and pathway databases

BioCyci PSTU379731:GJER-861-MONOMER.

Family and domain databases

Gene3Di 3.40.1030.10. 1 hit.
3.90.1170.30. 1 hit.
HAMAPi MF_00703. Thymid_phosp_2.
InterProi IPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
IPR013102. PYNP_C.
IPR000053. Pyrmidine_PPase.
IPR017872. Pyrmidine_PPase_CS.
IPR028579. Thym_Pase_Put.
IPR013466. Thymidine/AMP_Pase.
[Graphical view ]
PANTHERi PTHR10515. PTHR10515. 1 hit.
Pfami PF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
PF07831. PYNP_C. 1 hit.
[Graphical view ]
PIRSFi PIRSF000478. TP_PyNP. 1 hit.
SMARTi SM00941. PYNP_C. 1 hit.
[Graphical view ]
SUPFAMi SSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
SSF54680. SSF54680. 1 hit.
TIGRFAMsi TIGR02645. ARCH_P_rylase. 1 hit.
PROSITEi PS00647. THYMID_PHOSPHORYLASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the metabolically versatile and root-associated nitrogen-fixing bacterium Pseudomonas stutzeri A1501."
    Yan Y., Yang J., Dou Y., Ping S., Chen M., Yao Z., Li H., Lu W., Zhang W., Peng J., Liu W., He S., Geng L., Zhang X., Yang F., Li D., Lin Z., Wang Y.
    , Elmerich C., Lin M., Jin Q.
    Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: A1501.

Entry informationi

Entry nameiTYPH_PSEU5
AccessioniPrimary (citable) accession number: A4VHV6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: January 15, 2008
Last modified: October 1, 2014
This is version 46 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3