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A4V7V3

- A4V7V3_PSEFS

UniProt

A4V7V3 - A4V7V3_PSEFS

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Protein
Submitted name:

Putative phage DNA ligase

Gene

pQBR0407

Organism
Pseudomonas fluorescens (strain SBW25)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
Putative phage DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:pQBR0407Imported
Encoded oniPlasmid pQBR103Imported
OrganismiPseudomonas fluorescens (strain SBW25)Imported
Taxonomic identifieri216595 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000002332: Plasmid pQBR103

Interactioni

Protein-protein interaction databases

STRINGi216595.pQBR0407.

Structurei

3D structure databases

ProteinModelPortaliA4V7V3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG147398.
HOGENOMiHOG000236947.
KOiK01971.
OMAiYMRCSLP.
OrthoDBiEOG6GFGFV.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

A4V7V3-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MNSCEILRAL DTVAAVSGKL EKSALLTTYM VDPTFQRVMK LMLNPLISFY
60 70 80 90 100
KRPARSEVFG TEVFTDDTWL MLDRLATRQL SGDAASREVQ SALSTLTPES
110 120 130 140 150
SELLWRVLHR DPRAGFSEGS INKILPLTIP EVPYMRCSLP SDVDLESWPW
160 170 180 190 200
ARGIYLQEKA DGTFFALTVK NGGVTVISRS GFEWPLELYG ELGEVFASWP
210 220 230 240 250
DGQYHGEMLV EKDGAILPRE IGNGMLTSVN KGTPFQAGCV PVPYLWDVVP
260 270 280 290 300
LESLTRRGSC LTPYSERFSQ VGKVVEDLGG GKVRLIHTQV VYSLDEAYAA
310 320 330 340 350
SGVHIRNGKE GAVIKHPDGP WRDTGSSGSP FSVKIKMEAP AELRVKGLSK
360 370 380 390 400
GKGKNAKTFG ALECVSECGM LEVNISGFSD ELRLEIFNNP ERYIDSIIKV
410 420 430 440 450
TFNDVTKPNK KTNLYSLFLP RFGELRPDRT TADTVERIIQ QLEDAKATIG

MIESVAA
Length:457
Mass (Da):50,513
Last modified:May 29, 2007 - v1
Checksum:i7110A85AF22BD92F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM235768 Genomic DNA. Translation: CAM96439.1.
RefSeqiWP_011923214.1. NC_009444.1.
YP_001202153.1. NC_009444.1.

Genome annotation databases

GeneIDi5122089.
KEGGipfs:pQBR0407.
PATRICi19894139. VBIPseFlu98510_0209.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM235768 Genomic DNA. Translation: CAM96439.1 .
RefSeqi WP_011923214.1. NC_009444.1.
YP_001202153.1. NC_009444.1.

3D structure databases

ProteinModelPortali A4V7V3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 216595.pQBR0407.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 5122089.
KEGGi pfs:pQBR0407.
PATRICi 19894139. VBIPseFlu98510_0209.

Phylogenomic databases

eggNOGi NOG147398.
HOGENOMi HOG000236947.
KOi K01971.
OMAi YMRCSLP.
OrthoDBi EOG6GFGFV.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet."
    Tett A., Spiers A.J., Crossman L.C., Ager D., Ciric L., Dow J.M., Fry J.C., Harris D., Lilley A., Oliver A., Parkhill J., Quail M.A., Rainey P.B., Saunders N.J., Seeger K., Snyder L.A.S., Squares R., Thomas C.M.
    , Turner S.L., Zhang X.-X., Field D., Bailey M.J.
    ISME J. 1:331-340(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SBW25Imported.

Entry informationi

Entry nameiA4V7V3_PSEFS
AccessioniPrimary (citable) accession number: A4V7V3
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: October 29, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported, Reference proteomeImported

External Data

Dasty 3