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A4V7V3

- A4V7V3_PSEFS

UniProt

A4V7V3 - A4V7V3_PSEFS

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Protein
Submitted name: Putative phage DNA ligase
Gene
pQBR0407
Organism
Pseudomonas fluorescens (strain SBW25)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
Putative phage DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:pQBR0407Imported
Encoded oniPlasmid pQBR103Imported
OrganismiPseudomonas fluorescens (strain SBW25)Imported
Taxonomic identifieri216595 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000002332: Plasmid pQBR103

Interactioni

Protein-protein interaction databases

STRINGi216595.pQBR0407.

Structurei

3D structure databases

ProteinModelPortaliA4V7V3.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG147398.
HOGENOMiHOG000236947.
KOiK01971.
OMAiYMRCSLP.
OrthoDBiEOG6GFGFV.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

A4V7V3-1 [UniParc]FASTAAdd to Basket

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MNSCEILRAL DTVAAVSGKL EKSALLTTYM VDPTFQRVMK LMLNPLISFY    50
KRPARSEVFG TEVFTDDTWL MLDRLATRQL SGDAASREVQ SALSTLTPES 100
SELLWRVLHR DPRAGFSEGS INKILPLTIP EVPYMRCSLP SDVDLESWPW 150
ARGIYLQEKA DGTFFALTVK NGGVTVISRS GFEWPLELYG ELGEVFASWP 200
DGQYHGEMLV EKDGAILPRE IGNGMLTSVN KGTPFQAGCV PVPYLWDVVP 250
LESLTRRGSC LTPYSERFSQ VGKVVEDLGG GKVRLIHTQV VYSLDEAYAA 300
SGVHIRNGKE GAVIKHPDGP WRDTGSSGSP FSVKIKMEAP AELRVKGLSK 350
GKGKNAKTFG ALECVSECGM LEVNISGFSD ELRLEIFNNP ERYIDSIIKV 400
TFNDVTKPNK KTNLYSLFLP RFGELRPDRT TADTVERIIQ QLEDAKATIG 450
MIESVAA 457
Length:457
Mass (Da):50,513
Last modified:May 29, 2007 - v1
Checksum:i7110A85AF22BD92F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AM235768 Genomic DNA. Translation: CAM96439.1.
RefSeqiYP_001202153.1. NC_009444.1.

Genome annotation databases

GeneIDi5122089.
KEGGipfs:pQBR0407.
PATRICi19894139. VBIPseFlu98510_0209.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AM235768 Genomic DNA. Translation: CAM96439.1 .
RefSeqi YP_001202153.1. NC_009444.1.

3D structure databases

ProteinModelPortali A4V7V3.
ModBasei Search...

Protein-protein interaction databases

STRINGi 216595.pQBR0407.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 5122089.
KEGGi pfs:pQBR0407.
PATRICi 19894139. VBIPseFlu98510_0209.

Phylogenomic databases

eggNOGi NOG147398.
HOGENOMi HOG000236947.
KOi K01971.
OMAi YMRCSLP.
OrthoDBi EOG6GFGFV.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet."
    Tett A., Spiers A.J., Crossman L.C., Ager D., Ciric L., Dow J.M., Fry J.C., Harris D., Lilley A., Oliver A., Parkhill J., Quail M.A., Rainey P.B., Saunders N.J., Seeger K., Snyder L.A.S., Squares R., Thomas C.M.
    , Turner S.L., Zhang X.-X., Field D., Bailey M.J.
    ISME J. 1:331-340(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SBW25Imported.
    Plasmid: pQBR103

Entry informationi

Entry nameiA4V7V3_PSEFS
AccessioniPrimary (citable) accession number: A4V7V3
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: June 11, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported

External Data

Dasty 3

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