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Protein
Submitted name:

Putative phage DNA ligase

Gene

pQBR0407

Organism
Pseudomonas fluorescens (strain SBW25)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
Putative phage DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:pQBR0407Imported
Encoded oniPlasmid pQBR103Imported
OrganismiPseudomonas fluorescens (strain SBW25)Imported
Taxonomic identifieri216595 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000002332 Componenti: Plasmid pQBR103

Structurei

3D structure databases

ProteinModelPortaliA4V7V3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini152 – 324DNA_LIGASE_A3InterPro annotationAdd BLAST173
Domaini350 – 422DNA_ligase_OB_2InterPro annotationAdd BLAST73

Phylogenomic databases

HOGENOMiHOG000236947.
OMAiYMRCSLP.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

A4V7V3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNSCEILRAL DTVAAVSGKL EKSALLTTYM VDPTFQRVMK LMLNPLISFY
60 70 80 90 100
KRPARSEVFG TEVFTDDTWL MLDRLATRQL SGDAASREVQ SALSTLTPES
110 120 130 140 150
SELLWRVLHR DPRAGFSEGS INKILPLTIP EVPYMRCSLP SDVDLESWPW
160 170 180 190 200
ARGIYLQEKA DGTFFALTVK NGGVTVISRS GFEWPLELYG ELGEVFASWP
210 220 230 240 250
DGQYHGEMLV EKDGAILPRE IGNGMLTSVN KGTPFQAGCV PVPYLWDVVP
260 270 280 290 300
LESLTRRGSC LTPYSERFSQ VGKVVEDLGG GKVRLIHTQV VYSLDEAYAA
310 320 330 340 350
SGVHIRNGKE GAVIKHPDGP WRDTGSSGSP FSVKIKMEAP AELRVKGLSK
360 370 380 390 400
GKGKNAKTFG ALECVSECGM LEVNISGFSD ELRLEIFNNP ERYIDSIIKV
410 420 430 440 450
TFNDVTKPNK KTNLYSLFLP RFGELRPDRT TADTVERIIQ QLEDAKATIG

MIESVAA
Length:457
Mass (Da):50,513
Last modified:May 29, 2007 - v1
Checksum:i7110A85AF22BD92F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM235768 Genomic DNA. Translation: CAM96439.1.
RefSeqiWP_011923214.1. NC_009444.1.
YP_001202153.1. NC_009444.1.

Genome annotation databases

GeneIDi5122089.
PATRICi19894139. VBIPseFlu98510_0209.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM235768 Genomic DNA. Translation: CAM96439.1.
RefSeqiWP_011923214.1. NC_009444.1.
YP_001202153.1. NC_009444.1.

3D structure databases

ProteinModelPortaliA4V7V3.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi5122089.
PATRICi19894139. VBIPseFlu98510_0209.

Phylogenomic databases

HOGENOMiHOG000236947.
OMAiYMRCSLP.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiA4V7V3_PSEFS
AccessioniPrimary (citable) accession number: A4V7V3
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: November 30, 2016
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.