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A4V7V3

- A4V7V3_PSEFS

UniProt

A4V7V3 - A4V7V3_PSEFS

Protein
Submitted name:

Putative phage DNA ligase

Gene

pQBR0407

Organism
Pseudomonas fluorescens (strain SBW25)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 1 (29 May 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative phage DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:pQBR0407Imported
    Encoded oniPlasmid pQBR103Imported
    OrganismiPseudomonas fluorescens (strain SBW25)Imported
    Taxonomic identifieri216595 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000002332: Plasmid pQBR103

    Interactioni

    Protein-protein interaction databases

    STRINGi216595.pQBR0407.

    Structurei

    3D structure databases

    ProteinModelPortaliA4V7V3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG147398.
    HOGENOMiHOG000236947.
    KOiK01971.
    OMAiYMRCSLP.
    OrthoDBiEOG6GFGFV.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A4V7V3-1 [UniParc]FASTAAdd to Basket

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    MNSCEILRAL DTVAAVSGKL EKSALLTTYM VDPTFQRVMK LMLNPLISFY    50
    KRPARSEVFG TEVFTDDTWL MLDRLATRQL SGDAASREVQ SALSTLTPES 100
    SELLWRVLHR DPRAGFSEGS INKILPLTIP EVPYMRCSLP SDVDLESWPW 150
    ARGIYLQEKA DGTFFALTVK NGGVTVISRS GFEWPLELYG ELGEVFASWP 200
    DGQYHGEMLV EKDGAILPRE IGNGMLTSVN KGTPFQAGCV PVPYLWDVVP 250
    LESLTRRGSC LTPYSERFSQ VGKVVEDLGG GKVRLIHTQV VYSLDEAYAA 300
    SGVHIRNGKE GAVIKHPDGP WRDTGSSGSP FSVKIKMEAP AELRVKGLSK 350
    GKGKNAKTFG ALECVSECGM LEVNISGFSD ELRLEIFNNP ERYIDSIIKV 400
    TFNDVTKPNK KTNLYSLFLP RFGELRPDRT TADTVERIIQ QLEDAKATIG 450
    MIESVAA 457
    Length:457
    Mass (Da):50,513
    Last modified:May 29, 2007 - v1
    Checksum:i7110A85AF22BD92F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM235768 Genomic DNA. Translation: CAM96439.1.
    RefSeqiYP_001202153.1. NC_009444.1.

    Genome annotation databases

    GeneIDi5122089.
    KEGGipfs:pQBR0407.
    PATRICi19894139. VBIPseFlu98510_0209.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM235768 Genomic DNA. Translation: CAM96439.1 .
    RefSeqi YP_001202153.1. NC_009444.1.

    3D structure databases

    ProteinModelPortali A4V7V3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 216595.pQBR0407.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 5122089.
    KEGGi pfs:pQBR0407.
    PATRICi 19894139. VBIPseFlu98510_0209.

    Phylogenomic databases

    eggNOGi NOG147398.
    HOGENOMi HOG000236947.
    KOi K01971.
    OMAi YMRCSLP.
    OrthoDBi EOG6GFGFV.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet."
      Tett A., Spiers A.J., Crossman L.C., Ager D., Ciric L., Dow J.M., Fry J.C., Harris D., Lilley A., Oliver A., Parkhill J., Quail M.A., Rainey P.B., Saunders N.J., Seeger K., Snyder L.A.S., Squares R., Thomas C.M.
      , Turner S.L., Zhang X.-X., Field D., Bailey M.J.
      ISME J. 1:331-340(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: SBW25Imported.

    Entry informationi

    Entry nameiA4V7V3_PSEFS
    AccessioniPrimary (citable) accession number: A4V7V3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 29, 2007
    Last sequence update: May 29, 2007
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, PlasmidImported, Reference proteomeImported

    External Data

    Dasty 3