Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

A4V7V3 (A4V7V3_PSEFS) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
EC=6.5.1.1 EMBL CAM96439.1
Gene names
Ordered Locus Names:pQBR0407 EMBL CAM96439.1
Encoded onPlasmid pQBR103 Ref.1 EMBL CAM96439.1
OrganismPseudomonas fluorescens (strain SBW25) [Complete proteome] [HAMAP] EMBL CAM96439.1
Taxonomic identifier216595 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length457 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL CAM96439.1
   Technical termComplete proteome
Plasmid EMBL CAM96439.1
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A4V7V3 [UniParc].

Last modified May 29, 2007. Version 1.
Checksum: 7110A85AF22BD92F

FASTA45750,513
        10         20         30         40         50         60 
MNSCEILRAL DTVAAVSGKL EKSALLTTYM VDPTFQRVMK LMLNPLISFY KRPARSEVFG 

        70         80         90        100        110        120 
TEVFTDDTWL MLDRLATRQL SGDAASREVQ SALSTLTPES SELLWRVLHR DPRAGFSEGS 

       130        140        150        160        170        180 
INKILPLTIP EVPYMRCSLP SDVDLESWPW ARGIYLQEKA DGTFFALTVK NGGVTVISRS 

       190        200        210        220        230        240 
GFEWPLELYG ELGEVFASWP DGQYHGEMLV EKDGAILPRE IGNGMLTSVN KGTPFQAGCV 

       250        260        270        280        290        300 
PVPYLWDVVP LESLTRRGSC LTPYSERFSQ VGKVVEDLGG GKVRLIHTQV VYSLDEAYAA 

       310        320        330        340        350        360 
SGVHIRNGKE GAVIKHPDGP WRDTGSSGSP FSVKIKMEAP AELRVKGLSK GKGKNAKTFG 

       370        380        390        400        410        420 
ALECVSECGM LEVNISGFSD ELRLEIFNNP ERYIDSIIKV TFNDVTKPNK KTNLYSLFLP 

       430        440        450 
RFGELRPDRT TADTVERIIQ QLEDAKATIG MIESVAA 

« Hide

References

[1]"Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet."
Tett A., Spiers A.J., Crossman L.C., Ager D., Ciric L., Dow J.M., Fry J.C., Harris D., Lilley A., Oliver A., Parkhill J., Quail M.A., Rainey P.B., Saunders N.J., Seeger K., Snyder L.A.S., Squares R., Thomas C.M. expand/collapse author list , Turner S.L., Zhang X.-X., Field D., Bailey M.J.
ISME J. 1:331-340(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SBW25 EMBL CAM96439.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM235768 Genomic DNA. Translation: CAM96439.1.
RefSeqYP_001202153.1. NC_009444.1.

3D structure databases

ProteinModelPortalA4V7V3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING216595.pQBR0407.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5122089.
KEGGpfs:pQBR0407.
PATRIC19894139. VBIPseFlu98510_0209.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG147398.
HOGENOMHOG000236947.
KOK01971.
OMAYMRCSLP.
OrthoDBEOG6GFGFV.
ProtClustDBCLSK852280.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA4V7V3_PSEFS
AccessionPrimary (citable) accession number: A4V7V3
Entry history
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: April 16, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)