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A4UGR9 (XIRP2_HUMAN) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (5) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Xin actin-binding repeat-containing protein 2
Alternative name(s):
Beta-xin
Cardiomyopathy-associated protein 3
Xeplin
Gene names
Name:XIRP2
Synonyms:CMYA3
OrganismHomo sapiens (Human)
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length3374 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Protects actin filaments from depolymerization. Ref.7

Subunit structure

Interacts with ACTN2 By similarity. Interacts with F-actin. Ref.7

Subcellular location

Cell junction. Note: Colocalizes with actin stress fibers By similarity. Ref.7

Domain

Xin repeats bind F-actin.

Miscellaneous

'Xin' means 'heart' in Chinese.

Sequence similarities

Belongs to the Xin family.

Contains 28 Xin repeats.

Sequence caution

The sequence AAH18673.1 differs from that shown. Reason: Contaminating sequence. Potential poly-A sequence.

The sequence AAY24138.1 differs from that shown. Reason: Erroneous gene model prediction.

The sequence CAD38624.1 differs from that shown. Reason: Contaminating sequence. Potential poly-A sequence.

The sequence CAD89958.1 differs from that shown. Reason: Contaminating sequence.

The sequence CAD91141.2 differs from that shown. Reason: Contaminating sequence.

Ontologies

Keywords
   Cellular componentCell junction
   Coding sequence diversityAlternative splicing
Polymorphism
   DomainCoiled coil
Repeat
   LigandActin-binding
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological processactin cytoskeleton organization

Inferred from electronic annotation. Source: InterPro

   Cellular componentcell junction

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionactin binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Alternative products

This entry describes 7 isoforms produced by alternative splicing. [Align] [Select]
Isoform 1 (identifier: A4UGR9-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: A4UGR9-2)

The sequence of this isoform differs from the canonical sequence as follows:
     1-47: Missing.
Isoform 3 (identifier: A4UGR9-3)

The sequence of this isoform differs from the canonical sequence as follows:
     3344-3345: EA → GK
     3346-3374: Missing.
Isoform 4 (identifier: A4UGR9-4)

The sequence of this isoform differs from the canonical sequence as follows:
     1-1: M → MFPMQKGSLN...KGKETSFDKM
     218-771: TESEYEETFK...LEEVDRGDVK → KLLLQDKEIC...KRNRCYSDTE
     772-3374: Missing.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier
Natural variant7571R → G.
Corresponds to variant rs3749005 [ dbSNP | Ensembl ].
Natural variant8851V → G.
Corresponds to variant rs3749006 [ dbSNP | Ensembl ].
Natural variant9051E → Q.
Corresponds to variant rs16853344 [ dbSNP | Ensembl ].
Isoform 5 (identifier: A4UGR9-5)

The sequence of this isoform differs from the canonical sequence as follows:
     218-771: TESEYEETFK...LEEVDRGDVK → KLLLQDKEIC...KRNRCYSDTE
     772-3374: Missing.
Isoform 6 (identifier: A4UGR9-6)

The sequence of this isoform differs from the canonical sequence as follows:
     1-1: M → MFPMQKGSLN...KGKETSFDKM
     13-13: A → AVFSTDQAQILRLHLHPKLTKTPKNSLKSSTYIS
     218-771: TESEYEETFK...LEEVDRGDVK → KLLLQDKEIC...KRNRCYSDTE
     772-3374: Missing.
Isoform 7 (identifier: A4UGR9-7)

The sequence of this isoform differs from the canonical sequence as follows:
     1-47: Missing.
     218-771: TESEYEETFK...LEEVDRGDVK → KLLLQDKEIC...KRNRCYSDTE
     772-3374: Missing.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 33743374Xin actin-binding repeat-containing protein 2
PRO_0000316987

Regions

Repeat362 – 37716Xin 1
Repeat397 – 41216Xin 2
Repeat437 – 45216Xin 3
Repeat474 – 48916Xin 4
Repeat512 – 52716Xin 5
Repeat552 – 56716Xin 6
Repeat590 – 60516Xin 7
Repeat628 – 64316Xin 8
Repeat661 – 67616Xin 9
Repeat695 – 71016Xin 10
Repeat732 – 74716Xin 11
Repeat768 – 78316Xin 12
Repeat799 – 81416Xin 13
Repeat837 – 85216Xin 14
Repeat875 – 89016Xin 15
Repeat914 – 92916Xin 16
Repeat947 – 96216Xin 17
Repeat985 – 100016Xin 18
Repeat1020 – 103516Xin 19
Repeat1059 – 107416Xin 20
Repeat1095 – 111016Xin 21
Repeat1132 – 114716Xin 22
Repeat1170 – 118516Xin 23
Repeat1207 – 122216Xin 24
Repeat1241 – 125616Xin 25
Repeat1272 – 128716Xin 26
Repeat1310 – 132516Xin 27
Repeat1345 – 136016Xin 28
Coiled coil1736 – 176328 Potential
Coiled coil2369 – 239426 Potential
Coiled coil2768 – 279225 Potential
Coiled coil2823 – 284927 Potential
Compositional bias278 – 2825Poly-Pro
Compositional bias1036 – 10416Poly-Ser
Compositional bias2113 – 220189Pro-rich

Natural variations

Alternative sequence1 – 4747Missing in isoform 2 and isoform 7.
VSP_030846
Alternative sequence11M → MFPMQKGSLNLLRQKWESCD YQRSECHPRDSHCTIFQPQE SKLLAPEGEVVSAPQSLDPT SLPYSTGEEMWSSKPEEKDS VDKSNNTREYGRPEVLKEDS LSSRRRIERFSIALDELRSV FEAPKSGNKPAEYGGKEVEI ERSLCSPAFKSHPGSQLEDS VKDSDKKGKETSFDKM in isoform 4 and isoform 6.
VSP_035717
Alternative sequence131A → AVFSTDQAQILRLHLHPKLT KTPKNSLKSSTYIS in isoform 6.
VSP_035718
Alternative sequence218 – 771554TESEY…RGDVK → KLLLQDKEICILCQKTVYPM ECLVADKQNFHKSCFRCHHC NSKLSLGNYASLHGQIYCKP HFKQLFKSKGNYDEGFGHKQ HKDRWNCKNQSRSVDFIPNE EPNMCKNIAENTLVPGDRNE HLDAGNSEGQRNDLRKLGER GKLKVIWPPSKEIPKKTLPF EEELKMSKPKWPPEMTTLLS PEFKSESLLEDVRTPENKGQ RQDHFPFLQPYLQSTHVCQK EDVIGIKEMKMPEGRKDEKK EGRKNVQDRPSEAEDTKSNR KSAMDLNDNNNVIVQSAEKE KNEKTNQTNGAEVLQVTNTD DEMMPENHKENLNKNNNNNY VAVSYLNNCRQKTSILEFLD LLPLSSEANDTANEYEIEKL ENTSRISELLGIFESEKTYS RNVLAMALKKQTDRAAAGSP VQPAPKPSLSRGLMVKGGSS IISPDTNLLNIKGSHSKSKN LHFFFSNTVKITAFSKKNEN IFNCDLIDSVDQIKNMPCLD LREFGKDVKPWHVETTEAAR NNENTGFDALSHECTAKPLF PRVEVQSEQLTVEEQIKRNR CYSDTE in isoform 4, isoform 5, isoform 6 and isoform 7.
VSP_035719
Alternative sequence772 – 33742603Missing in isoform 4, isoform 5, isoform 6 and isoform 7.
VSP_035720
Alternative sequence3344 – 33452EA → GK in isoform 3.
VSP_030847
Alternative sequence3346 – 337429Missing in isoform 3.
VSP_030848
Natural variant4501P → A.
Corresponds to variant rs16853305 [ dbSNP | Ensembl ].
VAR_038449
Natural variant4571Y → H.
Corresponds to variant rs16853306 [ dbSNP | Ensembl ].
VAR_038450
Natural variant13971I → T.
Corresponds to variant rs7588159 [ dbSNP | Ensembl ].
VAR_038451
Natural variant14881I → T.
Corresponds to variant rs7591107 [ dbSNP | Ensembl ].
VAR_038452
Natural variant16261R → H.
Corresponds to variant rs16853309 [ dbSNP | Ensembl ].
VAR_038453
Natural variant18331N → S.
Corresponds to variant rs7607246 [ dbSNP | Ensembl ].
VAR_038454
Natural variant24231L → R.
Corresponds to variant rs16853326 [ dbSNP | Ensembl ].
VAR_038455
Natural variant25531S → N.
Corresponds to variant rs16853328 [ dbSNP | Ensembl ].
VAR_038456
Natural variant25951H → Y.
Corresponds to variant rs16853329 [ dbSNP | Ensembl ].
VAR_038457
Natural variant26071V → I.
Corresponds to variant rs16853330 [ dbSNP | Ensembl ].
VAR_038458
Natural variant27281G → D.
Corresponds to variant rs3749002 [ dbSNP | Ensembl ].
VAR_038459
Natural variant29101A → T.
Corresponds to variant rs16853331 [ dbSNP | Ensembl ].
VAR_038460
Natural variant29751Y → C.
Corresponds to variant rs3749003 [ dbSNP | Ensembl ].
VAR_038461
Natural variant30221I → V.
Corresponds to variant rs3749004 [ dbSNP | Ensembl ].
VAR_038462
Natural variant32021G → E.
Corresponds to variant rs16853333 [ dbSNP | Ensembl ].
VAR_038463

Experimental info

Sequence conflict1121E → G in AAH18673. Ref.6
Sequence conflict9261Q → L in CAF25193. Ref.7
Sequence conflict9261Q → L in CAD38624. Ref.8
Sequence conflict11441Q → R in CAF25193. Ref.7
Sequence conflict11441Q → R in CAD38624. Ref.8
Sequence conflict23181S → P in CAD91137. Ref.8
Sequence conflict25221H → P in CAD91146. Ref.8
Sequence conflict26611I → M in CAD91139. Ref.8
Sequence conflict26651K → N in CAD89958. Ref.8
Sequence conflict27131Q → R in CAD89919. Ref.8
Sequence conflict29671S → A in CAD91141. Ref.8
Sequence conflict29961S → P in CAD89919. Ref.8
Sequence conflict30131T → A in CAD91154. Ref.8
Sequence conflict30791E → G in CAD91137. Ref.8
Sequence conflict31211I → T in CAD89958. Ref.8
Sequence conflict31661E → G in CAD91141. Ref.8
Sequence conflict32591M → V in CAD91139. Ref.8
Sequence conflict32641S → L in CAD91141. Ref.8
Sequence conflict33291T → A in CAD91146. Ref.8

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 [UniParc].

Last modified February 5, 2008. Version 2.
Checksum: F02A01BD2D621F45

FASTA3,374382,300
        10         20         30         40         50         60 
MSPESGHSRI FEATAGPNKP ESGFAEDSAA RGEGVSDLHE VVSLKERMAR YQAAVSRGDC 

        70         80         90        100        110        120 
RSFSANMMEE SEMCAVPGGL AKVKKQFEDE ITSSRNTFAQ YQYQHQNRSE QEAIHSSQVG 

       130        140        150        160        170        180 
TSRSSQEMAR NEQEGSKVQK IDVHGTEMVS HLEKHTEEVN QASQFHQYVQ ETVIDTPEDE 

       190        200        210        220        230        240 
EIPKVSTKLL KEQFEKSAQE KILYSDKEMT TPAKQIKTES EYEETFKPSS VVSTSSTSCV 

       250        260        270        280        290        300 
STSQRKETST TRYSDHSVTS STLAQINATS SGMTEEFPPP PPDVLQTSVD VTAFSQSPEL 

       310        320        330        340        350        360 
PSPPRRLPVP KDVYSKQRNL YELNRLYKHI HPELRKNLEK DYISEVSEIV SSQMNSGSSV 

       370        380        390        400        410        420 
SADVQQARYV FENTNDSSQK DLNSEREYLE WDEILKGEVQ SIRWIFENQP LDSINNGSPD 

       430        440        450        460        470        480 
EGDISRGIAD QEIIAGGDVK YTTWMFETQP IDTLGAYSSD TVENAEKIPE LARGDVCTAR 

       490        500        510        520        530        540 
WMFETRPLDS MNKMHQSQEE SAVTISKDIT GGDVKTVRYM FETQHLDQLG QLHSVDEVHL 

       550        560        570        580        590        600 
LQLRSELKEI KGNVKRSIKC FETQPLYVIR DGSGQMLEIK TVHREDVEKG DVRTARWMFE 

       610        620        630        640        650        660 
TQPLDTINKD ITEIKVVRGI SMEENVKGGV SKAKWLFETQ PLEKIKESEE VIIEKEKIIG 

       670        680        690        700        710        720 
TDVSRKCWMF ETQPLDILKE VPDADSLQRE EIIGGDVQTT KHLFETLPIE ALKDSPDIGK 

       730        740        750        760        770        780 
LQKITASEEE KGDVRHQKWI FETQPLEDIR KDKKEYTRTV KLEEVDRGDV KNYTHIFESN 

       790        800        810        820        830        840 
NLIKFDASHK IEVEGVTRGA VELNKSLFET TPLYAIQDPL GKYHQVKTVQ QEEIVRGDVR 

       850        860        870        880        890        900 
SCRWLFETRP IDQFDESIHK FQIIRGISAQ EIQTGNVKSA KWLFETQPLD SIKYFSDVEE 

       910        920        930        940        950        960 
TESKTEQTRD IVKGDVKTCK WLFETQPMES LYEKVSLMTS SEEIHKGDVK TCTWLFETQP 

       970        980        990       1000       1010       1020 
LDTIKDDSET AVKLQTVKQE EIQGGDVRTA CFLFETENLD SIQGEEVKEI KPVEMDIQAG 

      1030       1040       1050       1060       1070       1080 
DVSSMRYKFE NQSLDSISSS SEEVLKKIKT LKTEDIQKGN VLNCRWLFEN QPIDKIKESQ 

      1090       1100       1110       1120       1130       1140 
EGDECVKTVT DIQGGDVRKG CFIFETFSLD EIKEESDYIS TKKTITEEVI QGDVKSYRML 

      1150       1160       1170       1180       1190       1200 
FETQPLYAIQ DREGSYHEVT TVKKEEVIHG DVRGTRWLFE TKPLDSINKS ETVYVIKSVT 

      1210       1220       1230       1240       1250       1260 
QEDIQKGDVS SVRYRFETQP LDQISEESHN IMPSIDHIQG GNVKTSRQFF ESENFDKNNY 

      1270       1280       1290       1300       1310       1320 
IRTVSVNEIQ KGNVKTSTWL FETHTMDELR GEGLEYENIK TVTQEDVQKG DVKQAVWLFE 

      1330       1340       1350       1360       1370       1380 
NRTFDSIMEA HKGITKMTKE EIPPSDVKTT TWLFETTPLH EFNETRVEKI EIIGKSIKET 

      1390       1400       1410       1420       1430       1440 
LEDLYSQKVI QAPGIIIEAD EIGDVRMAKY KLMNQASPEI QKEEIIRADL RNIMVNLLSK 

      1450       1460       1470       1480       1490       1500 
RDCTEREILI SEEEKGNVNL TKTQLLNRST EFHAEKEEIV KGDVQQAIKN LFSEERSVKK 

      1510       1520       1530       1540       1550       1560 
GILIQEDEKG DINMTIYCLL HENDGDTIER EEVIGGDVKR TIHNLLSSTS NNKISERAKI 

      1570       1580       1590       1600       1610       1620 
DASERGNVQF FTTCIEAGAL DYLKQLHTES NETLTAKKQE GEKEIIGGDV EGTKLLLKKR 

      1630       1640       1650       1660       1670       1680 
QSLVERTVSE TDIIPGDVHN TVKVFMTEPQ STFGKIPKEE IIKGDLTSTL NSLSQAVNQK 

      1690       1700       1710       1720       1730       1740 
TVTKTEEIIK GNMLATLKSL KESSHRWKES KQPDAIPGDI EKAIECLEKA TNTKTEILKK 

      1750       1760       1770       1780       1790       1800 
ELLKDDLETS LRSLKEAQRS FKEVHKEGVI KKDAKAVMAG SSGEQKTDIH QVAVQRNKNS 

      1810       1820       1830       1840       1850       1860 
LLQPKPGPFE PAAKWQGGAD TLSQTMGKSC HGNLVEERTE VNLPKAPKGT VKIVIDREQN 

      1870       1880       1890       1900       1910       1920 
NDALEKSLRR LSNSHHKSNV LESGDKTGVW TDTTGEQHLR DEYMSRQLTS TVSVKNNLTT 

      1930       1940       1950       1960       1970       1980 
KESDRAVREL KKDDVFNSIQ SAGKTVGKQQ TYELRNDHQK MEGFHIKSPK KTKNIKILTD 

      1990       2000       2010       2020       2030       2040 
TQSSKPSPTQ HPVSMPVGGT YDLSGDFQKQ TLLKQETKYS NKDIKKKNIN LQPMWQLLPV 

      2050       2060       2070       2080       2090       2100 
EQDTSNVTEM KVSEKSHNTF KATNKKRETD VHLKSQDFLM KTNTSTGLKM AMERSLNPIN 

      2110       2120       2130       2140       2150       2160 
FNPENNVKES ECPLPPPSPP PPPPSNASSE IEFPLPPPPP LMMFPEKNGF LPSLSTEKIK 

      2170       2180       2190       2200       2210       2220 
AEFESFPGLP LPPPPVDEKS ERESSSMFLP PPPPPTPSQK PAHLLSSSAP EKHSGDFMQQ 

      2230       2240       2250       2260       2270       2280 
YSQKEASNSQ NSQAKIITGK TGVLPPPTLP KPKLPKHIKD NKNDFSPKVE LATSLSDMEC 

      2290       2300       2310       2320       2330       2340 
KITTSKDQKK VMVMTSSEHT ETKQNVISKS LDERKQLSID SANCLSHTVP GTSAPRKKQI 

      2350       2360       2370       2380       2390       2400 
APLIKSHSFP ESSGQQNPKP YMRKFKTPLM IAEEKYRQQK EEIEKQKQES SYYNIVKTQS 

      2410       2420       2430       2440       2450       2460 
QNQHITEVEK EMPLQKTNEE VSLSGIDSEC TVVQPSPGSQ SNARILGVCS DNQLSTTSPE 

      2470       2480       2490       2500       2510       2520 
TVAAKRLHHV LAASEDKDKM KKEVLQSSRD IMQSKSACEI KQSHQECSTQ QTQQKKYLEQ 

      2530       2540       2550       2560       2570       2580 
LHLPQSKPIS PNFKVKTIKL PTLDHTLNET DHSYESHKQQ SEIDVQTFTK KQYLKTKKTE 

      2590       2600       2610       2620       2630       2640 
ASTECSHKQS LAERHYQLPK KEKRVTVQLP TESIQKNQED KLKMVPRKQR EFSGSDRGKL 

      2650       2660       2670       2680       2690       2700 
PGSEEKNQGP SMIGRKEERL ITERKHEHLK NKSAPKVVKQ KVIDAHLDSQ TQNFQQTQIQ 

      2710       2720       2730       2740       2750       2760 
TAESKAEHKK LPQPYNSLQE EKCLEVKGIQ EKQVFSNTKD SKQEITQNKS FFSSVKESQR 

      2770       2780       2790       2800       2810       2820 
DDGKGALNIV EFLRKREELQ QILSRVKQFE AEPNKSGLKT FQTLLNTIPG WLISEDKREY 

      2830       2840       2850       2860       2870       2880 
AVHIAMENNL EKVKEEITHI KTQAEDMLVS YENIIQTAMM SSKTGKPGNK PTSLDETSSK 

      2890       2900       2910       2920       2930       2940 
VSNVHVSNNK NSEQKENKIA KEKTVQHQVA AHHEATVRSH VKTHQEIKLD DSNIPPPSLK 

      2950       2960       2970       2980       2990       3000 
TRPPSPTFIT IESTARRTEN PTKNELSQSP KKDSYVEPPP RRPMSQKSEI HRANTSPSPP 

      3010       3020       3030       3040       3050       3060 
RSRSEQLVRL KDTTAKLSKG AIPCPAATPV PIVEKRSEII MSPATLRRQI KIETRGRDSP 

      3070       3080       3090       3100       3110       3120 
PTITIPVNIN HAASGSFRES VDAQEEIRKV EKRATYVHKD GLNSTDHMVP DTESYDAVEI 

      3130       3140       3150       3160       3170       3180 
IRKVAVPPRL SEHTQRYEAA NRTVQMAENF VNDPENEINR WFREFEHGPV SEAKSNRRVY 

      3190       3200       3210       3220       3230       3240 
AKGETNHNIQ QESRTFCKEE FGLTSLGNTS FTDFSCKHPR ELREKIPVKQ PRICSETRSL 

      3250       3260       3270       3280       3290       3300 
SEHFSGMDAF ESQIVESKMK TSSSHSSEAG KSGCDFKHAP PTYEDVIAGH ILDISDSPKE 

      3310       3320       3330       3340       3350       3360 
VRKNFQKTWQ ESGRVFKGLG YATADASATE MRTTFQEESA FISEAAAPRQ GNMYTLSKDS 

      3370 
LSNGVPSGRQ AEFS 

« Hide

Isoform 2 [UniParc].

Checksum: DAC9F3BDE6D3EDE9
Show »

FASTA3,327377,347
Isoform 3 [UniParc].

Checksum: BA1BAC0E92843A1E
Show »

FASTA3,345379,233
Isoform 4 [UniParc].

Checksum: 07F5488631088491
Show »

FASTA938106,597
Isoform 5 [UniParc].

Checksum: 9C40EB72B01F0750
Show »

FASTA76386,782
Isoform 6 [UniParc].

Checksum: D7D81097B20E3582
Show »

FASTA971110,333
Isoform 7 [UniParc].

Checksum: 88B0CF8F625388C8
Show »

FASTA71681,830

References

« Hide 'large scale' references
[1]"A novel gene containing a Xin repeat."
Luo J., Liu M., Wu X.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3).
[2]"bXin: genes, splice variants and cellular distribution of a family of proteins implicated."
Wang K., Xie L., Tsai W.L., Gutierrez-Cruz G.
Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 2; 4; 6 AND 7).
Tissue: Heart and Testis.
[3]"Complete sequencing and characterization of 21,243 full-length human cDNAs."
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. expand/collapse author list , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 5), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 901-1683 (ISOFORMS 1/2/3).
Tissue: Tongue.
[4]"Generation and annotation of the DNA sequences of human chromosomes 2 and 4."
Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H. expand/collapse author list , Sun H., Bradshaw-Cordum H., Ali J., Carter J., Cordes M., Harris A., Isak A., van Brunt A., Nguyen C., Du F., Courtney L., Kalicki J., Ozersky P., Abbott S., Armstrong J., Belter E.A., Caruso L., Cedroni M., Cotton M., Davidson T., Desai A., Elliott G., Erb T., Fronick C., Gaige T., Haakenson W., Haglund K., Holmes A., Harkins R., Kim K., Kruchowski S.S., Strong C.M., Grewal N., Goyea E., Hou S., Levy A., Martinka S., Mead K., McLellan M.D., Meyer R., Randall-Maher J., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Shah N., Swearengen-Shahid S., Snider J., Strong J.T., Thompson J., Yoakum M., Leonard S., Pearman C., Trani L., Radionenko M., Waligorski J.E., Wang C., Rock S.M., Tin-Wollam A.-M., Maupin R., Latreille P., Wendl M.C., Yang S.-P., Pohl C., Wallis J.W., Spieth J., Bieri T.A., Berkowicz N., Nelson J.O., Osborne J., Ding L., Meyer R., Sabo A., Shotland Y., Sinha P., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Jones T.A., She X., Ciccarelli F.D., Izaurralde E., Taylor J., Schmutz J., Myers R.M., Cox D.R., Huang X., McPherson J.D., Mardis E.R., Clifton S.W., Warren W.C., Chinwalla A.T., Eddy S.R., Marra M.A., Ovcharenko I., Furey T.S., Miller W., Eichler E.E., Bork P., Suyama M., Torrents D., Waterston R.H., Wilson R.K.
Nature 434:724-731(2005) [PubMed: 15815621] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[5]Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. expand/collapse author list , Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W., Venter J.C.
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[6]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 112-748 (ISOFORMS 1/2/3), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 3177-3374 (ISOFORMS 1/2).
Tissue: Skeletal muscle.
[7]"Xin repeats define a novel actin-binding motif."
Pacholsky D., Vakeel P., Himmel M., Loewe T., Stradal T., Rottner K., Fuerst D.O., van der Ven P.F.M.
J. Cell Sci. 117:5257-5268(2004) [PubMed: 15454575] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 361-1380 (ISOFORMS 1/2/3), FUNCTION, SUBCELLULAR LOCATION, INTERACTION WITH F-ACTIN.
Tissue: Skeletal muscle.
[8]"The full-ORF clone resource of the German cDNA consortium."
Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I.
BMC Genomics 8:399-399(2007) [PubMed: 17974005] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 439-3374 (ISOFORMS 1/2).
Tissue: Skeletal muscle.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY820969 mRNA. Translation: AAV87913.1.
EF119717 mRNA. Translation: ABO69245.1.
EF119718 mRNA. Translation: ABO69246.1.
EF119719 mRNA. Translation: ABO69247.1.
EF119720 mRNA. Translation: ABO69248.1.
EF119721 mRNA. Translation: ABO69249.1.
EF119722 mRNA. Translation: ABO69250.1.
EF119711 mRNA. Translation: ABO69251.1.
AK096430 mRNA. No translation available.
AK122889 mRNA. Translation: BAG53782.1.
AC093684 Genomic DNA. Translation: AAY24138.1. Sequence problems.
AC108494 Genomic DNA. No translation available.
AC133782 Genomic DNA. No translation available.
AC092601 Genomic DNA. No translation available.
CH471058 Genomic DNA. Translation: EAX11311.1.
BC018673 mRNA. Translation: AAH18673.1. Sequence problems.
BC022888 mRNA. No translation available.
AJ626901 mRNA. Translation: CAF25193.1.
AL832331 mRNA. Translation: CAD38624.1. Sequence problems.
AL831970 mRNA. Translation: CAD89919.1.
AL832452 mRNA. Translation: CAD89958.1. Sequence problems.
AL832336 mRNA. Translation: CAD91137.1.
AL831985 mRNA. Translation: CAD91139.1.
AL833291 mRNA. Translation: CAD91141.2. Sequence problems.
AL832011 mRNA. Translation: CAD91146.1.
AL832360 mRNA. Translation: CAD91154.1.
AL832382 mRNA. Translation: CAD91156.1.
IPIIPI00167400.
IPI00550232.
IPI00885004.
IPI00893002.
IPI00915318.
IPI00915341.
IPI01015807.
RefSeqNP_001073278.1. NM_001079810.3.
NP_001186072.1. NM_001199143.1.
NP_001186073.1. NM_001199144.1.
NP_001186074.1. NM_001199145.1.
NP_689594.4. NM_152381.5.
UniGeneHs.73680.

3D structure databases

ProteinModelPortalA4UGR9.
ModBaseSearch...

Protein-protein interaction databases

IntActA4UGR9. 1 interaction.
STRINGA4UGR9.

PTM databases

PhosphoSiteA4UGR9.

Proteomic databases

PRIDEA4UGR9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENST00000295237; ENSP00000295237; ENSG00000163092.
ENST00000409195; ENSP00000386840; ENSG00000163092.
ENST00000413534; ENSP00000393625; ENSG00000163092.
GeneID129446.
KEGGhsa:129446.
UCSCuc002udx.1. human.
uc002udy.2. human.

Organism-specific databases

CTD129446.
GeneCardsGC02P167744.
H-InvDBHIX0002564.
HGNCHGNC:14303. XIRP2.
HPAHPA034813.
MIM609778. gene.
neXtProtNX_A4UGR9.
PharmGKBPA162409337.
GenAtlasSearch...

Phylogenomic databases

eggNOGprNOG06833.
GeneTreeENSGT00530000063779.
HOVERGENHBG108682.
InParanoidA4UGR9.

Gene expression databases

BgeeA4UGR9.
GenevestigatorA4UGR9.

Family and domain databases

InterProIPR012510. Actin-binding_Xin_repeat.
[Graphical view]
PfamPF08043. Xin. 14 hits.
[Graphical view]
PROSITEPS51389. XIN. 28 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio82581.
SOURCESearch...

Entry information

Entry nameXIRP2_HUMAN
AccessionPrimary (citable) accession number: A4UGR9
Secondary accession number(s): A0PJ94 expand/collapse secondary AC list , B2BBS0, B2BBS1, B2BBS4, B3KVH0, Q53R52, Q5MJ67, Q702N7, Q86T36, Q86T38, Q86T46, Q86T51, Q86T53, Q86T55, Q86T79, Q86TB6, Q8N1M9, Q8N3R5, Q8TBV6
Entry history
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: February 5, 2008
Last modified: January 25, 2012
This is version 43 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

Human chromosome 2

Human chromosome 2: entries, gene names and cross-references to MIM

Human entries with polymorphisms or disease mutations

List of human entries with polymorphisms or disease mutations

Human polymorphisms and disease mutations

Index of human polymorphisms and disease mutations

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

SIMILARITY comments

Index of protein domains and families