ID   A4TD79_MYCGI            Unreviewed;       755 AA.
AC   A4TD79;
DT   15-MAY-2007, integrated into UniProtKB/TrEMBL.
DT   15-MAY-2007, sequence version 1.
DT   27-MAR-2024, entry version 98.
DE   SubName: Full=Putative GAF sensor protein {ECO:0000313|EMBL:ABP46987.1};
GN   OrderedLocusNames=Mflv_4519 {ECO:0000313|EMBL:ABP46987.1};
OS   Mycolicibacterium gilvum (strain PYR-GCK) (Mycobacterium gilvum (strain
OS   PYR-GCK)).
OC   Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae;
OC   Mycolicibacterium.
OX   NCBI_TaxID=350054 {ECO:0000313|EMBL:ABP46987.1};
RN   [1] {ECO:0000313|EMBL:ABP46987.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=PYR-GCK {ECO:0000313|EMBL:ABP46987.1};
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA   Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA   Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M.,
RA   Hauser L., Kyrpides N., Mikhailova N., Miller C., Richardson P.;
RL   Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ABP46987.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=PYR-GCK {ECO:0000313|EMBL:ABP46987.1};
RX   PubMed=23469141;
RA   Badejo A.C., Badejo A.O., Shin K.H., Chai Y.G.;
RT   "A Gene Expression Study of the Activities of Aromatic Ring-Cleavage
RT   Dioxygenases in Mycobacterium gilvum PYR-GCK to Changes in Salinity and pH
RT   during Pyrene Degradation.";
RL   PLoS ONE 8:E58066-E58066(2013).
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DR   EMBL; CP000656; ABP46987.1; -; Genomic_DNA.
DR   AlphaFoldDB; A4TD79; -.
DR   STRING; 350054.Mflv_4519; -.
DR   KEGG; mgi:Mflv_4519; -.
DR   eggNOG; COG2208; Bacteria.
DR   eggNOG; COG4251; Bacteria.
DR   HOGENOM; CLU_000445_50_5_11; -.
DR   OrthoDB; 23692at2; -.
DR   GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR   GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR   Gene3D; 3.30.450.270; -; 1.
DR   Gene3D; 3.30.450.40; -; 1.
DR   Gene3D; 3.30.450.20; PAS domain; 1.
DR   Gene3D; 3.60.40.10; PPM-type phosphatase domain; 1.
DR   InterPro; IPR003018; GAF.
DR   InterPro; IPR029016; GAF-like_dom_sf.
DR   InterPro; IPR035965; PAS-like_dom_sf.
DR   InterPro; IPR013654; PAS_2.
DR   InterPro; IPR016132; Phyto_chromo_attachment.
DR   InterPro; IPR001294; Phytochrome.
DR   InterPro; IPR013515; Phytochrome_cen-reg.
DR   InterPro; IPR043150; Phytochrome_PHY_sf.
DR   InterPro; IPR036457; PPM-type-like_dom_sf.
DR   InterPro; IPR001932; PPM-type_phosphatase-like_dom.
DR   PANTHER; PTHR43156:SF2; MULTIDOMAIN REGULATORY PROTEIN RV1364C; 1.
DR   PANTHER; PTHR43156; STAGE II SPORULATION PROTEIN E-RELATED; 1.
DR   Pfam; PF01590; GAF; 1.
DR   Pfam; PF08446; PAS_2; 1.
DR   Pfam; PF00360; PHY; 1.
DR   Pfam; PF07228; SpoIIE; 1.
DR   PRINTS; PR01033; PHYTOCHROME.
DR   SMART; SM00065; GAF; 1.
DR   SMART; SM00331; PP2C_SIG; 1.
DR   SUPFAM; SSF55781; GAF domain-like; 2.
DR   SUPFAM; SSF81606; PP2C-like; 1.
DR   SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR   PROSITE; PS50046; PHYTOCHROME_2; 1.
PE   4: Predicted;
KW   Chromophore {ECO:0000256|ARBA:ARBA00022991};
KW   Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543};
KW   Receptor {ECO:0000256|ARBA:ARBA00022543};
KW   Sensory transduction {ECO:0000256|ARBA:ARBA00022606}.
FT   DOMAIN          164..323
FT                   /note="Phytochrome chromophore attachment site"
FT                   /evidence="ECO:0000259|PROSITE:PS50046"
SQ   SEQUENCE   755 AA;  81762 MW;  195F6ED86CB3400A CRC64;
     MTGPGPAGLD ASDGLVAVGT PIDLDNCARE PIHIPGSVQP RGVLVVVREP EFEVRQVSAN
     VEELLGHPVE SVLGRHLSAL MGASQAARVQ QAASIVGDLH RRNPVECVLD VRGKSLEFDA
     ILHREPGGVL LVELEVAFGA RPYSFPNTYQ AVRSSVEALN RATTMADLYD TAARSVRELT
     GFDRVMVYRY DEEYNGEVVA EAKRDDLNSF LGLHYPSTDI PAQARALYEK NWLRLISDVD
     YAPVPLVPAV DPAVGKPLDL THATLRSVSP IHIEYLQNMG VHASMSISLL RHGRLWGLIA
     CHHYAGPHLP PFGNRAAAEF LGSTLSLRLV DQYEDDQLHR RLDAQAVLVK LTAATMNDGK
     PLVSALLGAP DLLDLVPADG VVVDIGGHHR TRGSVPSPEV VAAVAAWARA AEDEIARSDS
     LSRTLPDLDV DPALAAGALV LNLPDGQFAA WFRRESLRSV DWGGDPHNKA IAVSEGGEVR
     LSPRKSFERW QEIVRDRGEP WTPTEIESAD MLRRHLVETL YHRTRGALRV AELVQRSLIP
     DSIPDLESWE LTAHYEPAAG ERVGGDWYDA FELRDGRLIV VVGDVAGHGV TVAGTMAQLR
     NALRAQLFAG AAPAEAVRQL NDFCVHLLRS AFATVLVARV DLDSGLVEAT SAGHLMPYLT
     EGSATAVAAP IRLSPPIGLS SARYTQSTFT IEPGQCLVLY SDGLVERRGE VIDDGMDRLA
     RGLGECAEPA AYPIWAALAS GHTEDDVTVV TLRRP
//