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A4T6Z6

- A4T6Z6_MYCGI

UniProt

A4T6Z6 - A4T6Z6_MYCGI

Protein
Submitted name:

ATP-dependent DNA ligase LigD ligase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module

Gene

Mflv_1828

Organism
Mycobacterium gilvum (strain PYR-GCK) (Mycobacterium flavescens (strain ATCC 700033 / PYR-GCK))
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 51 (01 Oct 2014)
      Sequence version 1 (15 May 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciMGIL350054:GHK8-1846-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigD ligase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase moduleImported
    Gene namesi
    Ordered Locus Names:Mflv_1828Imported
    OrganismiMycobacterium gilvum (strain PYR-GCK) (Mycobacterium flavescens (strain ATCC 700033 / PYR-GCK))Imported
    Taxonomic identifieri350054 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium
    ProteomesiUP000000232: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi350054.Mflv_1828.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSKGIHLY.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A4T6Z6-1 [UniParc]FASTAAdd to Basket

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    MVDRYDRVKL TNPDKVLYPA SGTTKAQVFE YYVNVAEGML PHIAGRAVTR    50
    KRWPNGVEES SFFEKQLASS APDWLDRGTI AHKSGTTTYP VIDTVEGLAW 100
    IAQQAALEVH VPQWRFTRGG QSGAADGGDG KPGPATRIVF DLDPGEGVTF 150
    RQLCEVAHEV RELITDIGLT TFPLTSGSKG LHLYVPLEDP ISSRGASVLA 200
    KRVAQQLEQS MPKRVTATMT KSLRDGKVFL DWSQNNGNKT TIAPYSLRGR 250
    ERPTVAAPRT WDEIEDPDLR HLTFDEVLDR LERDGDLLAD LDPPLPATDK 300
    LTRYRSMRDR TKTPEPVPAE PPETGANDKF VIQEHHARRL HYDFRLERDG 350
    VLVSWAVPKN LPDTPSVNHL AVHTEDHPMD YIDFAGEIPK GEYGGGEVHI 400
    WDTGTYETEK FRDNPPDGPA KGGEVIVTLH GQKIEGRYAL IQTDGKNWLA 450
    HRMKDQQKPT AADLAPMLTT EGSVERLTRG QWAFEGKWDG YRLLVDADHG 500
    KLTLRSRRGR DVTAEYPQLK ALAADLADHH VILDGEAVAL DEDGVPSFGE 550
    MQNRARSTRV EFWAFDILFL DGRLLTKATY TDRRKLLEAL AEGGGLIVPP 600
    ALEGDGPEAL EYARSQRWEG VIAKKRDSTY QPGRRSSAWI KDKIWNTQEV 650
    VIGGWRQGEG GRTSGIGALV LGVPDDDGLH FVGRVGTGFT DKQLASLKKT 700
    LEPLRTDESP FAAELPKQDA KGVTFVRPEL VGEVRYSERT SDGRLRQASW 750
    RGLRDDKVPE DVRWEG 766
    Length:766
    Mass (Da):85,317
    Last modified:May 15, 2007 - v1
    Checksum:iCF2195716041FCEE
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000656 Genomic DNA. Translation: ABP44308.1.
    RefSeqiWP_011892719.1. NC_009338.1.
    YP_001133096.1. NC_009338.1.

    Genome annotation databases

    EnsemblBacteriaiABP44308; ABP44308; Mflv_1828.
    GeneIDi4973152.
    KEGGimgi:Mflv_1828.
    PATRICi18031743. VBIMycGil17082_1869.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000656 Genomic DNA. Translation: ABP44308.1 .
    RefSeqi WP_011892719.1. NC_009338.1.
    YP_001133096.1. NC_009338.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 350054.Mflv_1828.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABP44308 ; ABP44308 ; Mflv_1828 .
    GeneIDi 4973152.
    KEGGi mgi:Mflv_1828.
    PATRICi 18031743. VBIMycGil17082_1869.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SKGIHLY.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci MGIL350054:GHK8-1846-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PYR-GCKImported.

    Entry informationi

    Entry nameiA4T6Z6_MYCGI
    AccessioniPrimary (citable) accession number: A4T6Z6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 15, 2007
    Last sequence update: May 15, 2007
    Last modified: October 1, 2014
    This is version 51 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3