A4T2J2 (A4T2J2_MYCGI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L21 HAMAP MF_01363 RuleBase RU000562

Gene names

Name:	rplU HAMAP MF_01363
Ordered Locus Names:	Mflv_2635

Organism

Mycobacterium gilvum (strain PYR-GCK) (Mycobacterium flavescens (strain ATCC 700033 / PYR-GCK)) [Complete proteome] [HAMAP]

Taxonomic identifier

350054 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium

Protein attributes

Sequence length	107 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This protein binds to 23S rRNA in the presence of protein L20 By similarity. HAMAP MF_01363 RuleBase RU000562
Subunit structure	Part of the 50S ribosomal subunit. Contacts protein L20 By similarity. HAMAP MF_01363
Sequence similarities	Belongs to the ribosomal protein L21P family. HAMAP MF_01363 RuleBase RU000562

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP MF_01363 RuleBase RU000562
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP MF_01363 RuleBase RU000562 EMBL ABP45112.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A4T2J2 [UniParc]. Last modified May 15, 2007. Version 1. Checksum: DF282C82ABB3C5C5	FASTA	107	11,431
	10 20 30 40 50 60 MAAKSATYAI VKTGGKQYKV AAGDIVKVEK LDVEPGASVS LPVALVVDGA NVTTDAKALE 70 80 90 100 KVAVTGEVLE HTKGPKIRIH KFKNKTGYHK RQGHRQQLTV LKVTGIK

References

[1]

"Complete sequence of chromosome of Mycobacterium gilvum PYR-GCK." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Mikhailova N., Miller C., Richardson P. Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: PYR-GCK.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000656 Genomic DNA. Translation: ABP45112.1.
RefSeq	YP_001133900.1. NC_009338.1.
3D structure databases
ProteinModelPortal	A4T2J2.
ModBase	Search...
Protein-protein interaction databases
STRING	A4T2J2.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EBMYCT00000026807; EBMYCP00000026469; EBMYCG00000026802.
GeneID	4973956.
GenomeReviews	Gene locus Mflv_2635 in contig CP000656_GR.
KEGG	mgi:Mflv_2635.
PATRIC	18033419. VBIMycGil17082_2694.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0261.
GeneTree	EBGT00050000017407.
HOGENOM	HBG706775.
OMA	IKVEQIA.
PhylomeDB	A4T2J2.
ProtClustDB	PRK05573.
Family and domain databases
HAMAP	MF_01363. Ribosomal_L21. [Tree]
InterPro	IPR001787. Ribosomal_L21. IPR018258. Ribosomal_L21_CS. [Graphical view]
KO	K02888.
PANTHER	PTHR21349. Ribosomal_L21p. 1 hit.
Pfam	PF00829. Ribosomal_L21p. 1 hit. [Graphical view]
TIGRFAMs	TIGR00061. L21. 1 hit.
PROSITE	PS01169. RIBOSOMAL_L21. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A4T2J2_MYCGI

Accession

Primary (citable) accession number: A4T2J2

Entry history

Integrated into UniProtKB/TrEMBL:	May 15, 2007
Last sequence update:	May 15, 2007
Last modified:	December 14, 2011
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)