A4T0I2 (A4T0I2_POLSQ) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Ribosomal large subunit pseudouridine synthase F EMBL ABP35246.1
EC=5.4.99.- EMBL ABP35246.1

Gene names

Ordered Locus Names:

Pnuc_2035 EMBL ABP35246.1

Organism

Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) [Complete proteome] [HAMAP] EMBL ABP35246.1

Taxonomic identifier

312153 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Polynucleobacter › Polynucleobacter necessarius › Polynucleobacter necessarius subsp. asymbioticus

Protein attributes

Sequence length	245 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 S4 RNA-binding domain. SAAS SAAS006145

Ontologies

Keywords
Ligand	RNA-binding SAAS SAAS006145
Molecular function	Isomerase SAAS SAAS006145 EMBL ABP35246.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: UniProtKB-KW pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A4T0I2 [UniParc]. Last modified May 15, 2007. Version 1. Checksum: B82CF088C8AA5FA6	FASTA	245	27,760
	10 20 30 40 50 60 MEEKVRVSKL LSELGLCSRR EADSYIEQGL VTVDGEVVNE LGVRAYRHQK IELQSGAKAQ 70 80 90 100 110 120 QASRITVILN KPVGYISHFD DEQEYQPAAS LITPDNYFAS PLDKGRNPRF NTKGLAPAGR 130 140 150 160 170 180 LDIDSTGLLV LTQDGRIAKL LIGENSPIEK EYLVRVEGKL SFEDLDKLRH GLTLDDVVLK 190 200 210 220 230 240 PAQVSWQNED QLRFVLREGR KRQIRRMCEM VGLKVIGLKR VRIGRISLGP LPPGQWRFVR PEEQF

References

[1]

"Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1(T))." Meincke L., Copeland A., Lapidus A., Lucas S., Berry K.W., Del Rio T.G., Hammon N., Dalin E., Tice H., Pitluck S., Richardson P., Bruce D., Goodwin L., Han C., Tapia R., Detter J.C., Schmutz J., Brettin T. , Larimer F., Land M., Hauser L., Kyrpides N.C., Ivanova N., Goker M., Woyke T., Wu Q.L., Pockl M., Hahn M.W., Klenk H.P. Stand. Genomic Sci. 6:74-83(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 18221 / CIP 109841 / QLW-P1DMWA-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000655 Genomic DNA. Translation: ABP35246.1.
RefSeq	YP_001156810.1. NC_009379.1.
3D structure databases
ProteinModelPortal	A4T0I2.
ModBase	Search...
Protein-protein interaction databases
STRING	312153.Pnuc_2035.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABP35246; ABP35246; Pnuc_2035.
GeneID	5053135.
KEGG	pnu:Pnuc_2035.
PATRIC	22968595. VBIPolNec12025_2101.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1187.
HOGENOM	HOG000044956.
KO	K06182.
OMA	RLNKRMA.
ProtClustDB	CLSK2324144.
Enzyme and pathway databases
BioCyc	PNEC312153:GH50-2079-MONOMER.
Family and domain databases
Gene3D	3.10.290.10. 1 hit.
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR000748. PsdUridine_synth_RsuA/RluB/E/F. IPR006145. PsdUridine_synth_RsuA/RluD. IPR002942. S4_RNA-bd. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00093. TIGR00093. 1 hit.
PROSITE	PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A4T0I2_POLSQ

Accession

Primary (citable) accession number: A4T0I2

Entry history

Integrated into UniProtKB/TrEMBL:	May 15, 2007
Last sequence update:	May 15, 2007
Last modified:	May 1, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)