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A4SZU3 (A4SZU3_POLSQ) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length459 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
A4SZU3 [UniParc].

Last modified May 15, 2007. Version 1.
Checksum: 7DFF3D96B650CD7F

FASTA45950,914
        10         20         30         40         50         60 
MSQPLSTLNA LSPLDGRYAG KLDALRPWLS EAAFMRQRVF VEIHWLLALA AAGLPDVPKI 

        70         80         90        100        110        120 
SAADEAFLLS LPENFSDADA QRIKDIEAVT NHDVKAVEYF LKEKVAGRPD LLKASEFIHF 

       130        140        150        160        170        180 
ACTSEDINNT SHGLMLRGAR DEVLLPQLRK VLSVLTELAL ENAKVPLLSR THGQPASPST 

       190        200        210        220        230        240 
LGKEIANIAK RLERAIESIA TAPLLGKMNG AVGNYNAHIS AYPDFDWENF SKNVVEKRLG 

       250        260        270        280        290        300 
LTFNPYTIQI EPHDGMAQLF DAIARANTIL LDMDRDFWAY ISIGYFKQRT KAGEIGSSTM 

       310        320        330        340        350        360 
PHKVNPIDFE NSEGNLGVAN ALLRHLAEKL PISRWQRDLT DSTVLRNLGP AFGHSVLAYD 

       370        380        390        400        410        420 
SALRGLGKLE VNHAAIAADL DECWEVLAEP VQTVMRRYGI ENPYEQLKEL TRGKGINQAD 

       430        440        450 
LQNFIRGLKI PEDAKARLLE MTPSSYLGKA VELTERLKK

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References

[1]"Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1(T))."
Meincke L., Copeland A., Lapidus A., Lucas S., Berry K.W., Del Rio T.G., Hammon N., Dalin E., Tice H., Pitluck S., Richardson P., Bruce D., Goodwin L., Han C., Tapia R., Detter J.C., Schmutz J., Brettin T. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N.C., Ivanova N., Goker M., Woyke T., Wu Q.L., Pockl M., Hahn M.W., Klenk H.P.
Stand. Genomic Sci. 6:74-83(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 18221 / CIP 109841 / QLW-P1DMWA-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000655 Genomic DNA. Translation: ABP35007.1.
RefSeqYP_001156571.1. NC_009379.1.

3D structure databases

ProteinModelPortalA4SZU3.
SMRA4SZU3. Positions 5-458.
ModBaseSearch...

Protein-protein interaction databases

STRING312153.Pnuc_1794.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABP35007; ABP35007; Pnuc_1794.
GeneID5052146.
KEGGpnu:Pnuc_1794.
PATRIC22968113. VBIPolNec12025_1862.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0015.
HOGENOMHOG000252916.
KOK01756.
OMATQIEHYD.
ProtClustDBPRK09285.

Enzyme and pathway databases

BioCycPNEC312153:GH50-1838-MONOMER.

Family and domain databases

Gene3D1.10.275.10. 1 hit.
InterProIPR013539. AdenyloSucc_lyase_C_pln.
IPR024083. Fumarase/histidase_N.
IPR000362. Fumarate_lyase.
IPR020557. Fumarate_lyase_CS.
IPR022761. Fumarate_lyase_N.
IPR008948. L-Aspartase-like.
IPR004769. Pur_lyase.
[Graphical view]
PANTHERPTHR11444:SF2. PTHR11444:SF2. 1 hit.
PfamPF08328. ASL_C. 1 hit.
PF00206. Lyase_1. 1 hit.
[Graphical view]
PRINTSPR00149. FUMRATELYASE.
SUPFAMSSF48557. L-Aspartase-like. 1 hit.
TIGRFAMsTIGR00928. purB. 1 hit.
PROSITEPS00163. FUMARATE_LYASES. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA4SZU3_POLSQ
AccessionPrimary (citable) accession number: A4SZU3
Entry history
Integrated into UniProtKB/TrEMBL: May 15, 2007
Last sequence update: May 15, 2007
Last modified: May 1, 2013
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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