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A4SYX7 (A4SYX7_POLSQ) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptide deformylase 1 HAMAP MF_00163
Short name=PDF 1 HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase 1 HAMAP MF_00163
Gene names
Name:def1 HAMAP MF_00163
Ordered Locus Names:Pnuc_1477
OrganismPolynucleobacter sp. (strain QLW-P1DMWA-1) [Complete proteome] [HAMAP] EMBL ABP34691.1
Taxonomic identifier312153 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Polynucleobacter

Protein attributes

Sequence length181 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1451 By similarity HAMAP MF_00163
Metal binding1021Iron By similarity HAMAP MF_00163
Metal binding1441Iron By similarity HAMAP MF_00163
Metal binding1481Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
A4SYX7 [UniParc].

Last modified May 15, 2007. Version 1.
Checksum: 051E61178CE10FCE

FASTA18120,439
        10         20         30         40         50         60 
MAIQSILRMG DPRLLEIAKP VDPKLISSQQ IQTLIDDLLE TMYAVNGAGL AAPQIGVNQQ 

        70         80         90        100        110        120 
VVVFGFDQNP RYPDAEQVPE TILINPIITP LSDISMEDWE GCLSVPGLRA KVPRYTKIRY 

       130        140        150        160        170        180 
QGFDRYGQSI DRTVEDFHAR VVRHECDHLI GKLFPMRVKD FTNFGFTDVL FPELRDAPPA 


E

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References

[1]"Complete sequence of Polynucleobacter sp. QLW-P1DMWA-1."
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Meincke L., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Mikhailova N., Poeckl M., Wu Q.L., Hahn M., Richardson P.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: QLW-P1DMWA-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000655 Genomic DNA. Translation: ABP34691.1.
RefSeqYP_001156255.1. NC_009379.1.

3D structure databases

ProteinModelPortalA4SYX7.
ModBaseSearch...

Protein-protein interaction databases

STRINGA4SYX7.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5052089.
GenomeReviewsGene locus Pnuc_1477 in contig CP000655_GR.
KEGGpnu:Pnuc_1477.
PATRIC22967463. VBIPolNec12025_1538.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0242.
HOGENOMHBG665227.
OMAHNERYPD.

Enzyme and pathway databases

BioCycPSP312153:PNUC_1477-MONOMER.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA4SYX7_POLSQ
AccessionPrimary (citable) accession number: A4SYX7
Entry history
Integrated into UniProtKB/TrEMBL: May 15, 2007
Last sequence update: May 15, 2007
Last modified: December 14, 2011
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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