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A4SYD0 (A4SYD0_POLSQ) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Malate synthase G HAMAP MF_00641
EC=2.3.3.9 HAMAP MF_00641
Gene names
Name:glcB HAMAP MF_00641
Ordered Locus Names:Pnuc_1280
OrganismPolynucleobacter sp. (strain QLW-P1DMWA-1) [Complete proteome] [HAMAP] EMBL ABP34494.1
Taxonomic identifier312153 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Polynucleobacter

Protein attributes

Sequence length737 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Acetyl-CoA + H2O + glyoxylate = (S)-malate + CoA. HAMAP MF_00641 SAAS SAAS006253

Pathway

Carbohydrate metabolism; glyoxylate cycle; (S)-malate from isocitrate: step 2/2. HAMAP MF_00641 SAAS SAAS006253

Subunit structure

Monomer By similarity. HAMAP MF_00641 SAAS SAAS006253

Subcellular location

Cytoplasm By similarity HAMAP MF_00641.

Sequence similarities

Belongs to the malate synthase family. GlcB subfamily. HAMAP MF_00641

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site3461Proton acceptor By similarity HAMAP MF_00641
Active site6441Proton donor By similarity HAMAP MF_00641

Sequences

Sequence LengthMass (Da)Tools
A4SYD0 [UniParc].

Last modified May 15, 2007. Version 1.
Checksum: CF719A35FA9EB66E

FASTA73780,203
        10         20         30         40         50         60 
MTARTTCNSL QVATPLYRFI EDKVLPGTGI KSADFWKGFD EIVKDLTPKN EALLAKRDRI 

        70         80         90        100        110        120 
QVDLDKWHQA NPGPIKDMPA YRKFLKEIGY LDDVPGKVLG TTENVDDELA LQAGPQLVVP 

       130        140        150        160        170        180 
VLNARYALNA ANARWGSLYD ALYGTDVLSE EDGATKAGAY NPIRGAKVVA FARNFLDQSA 

       190        200        210        220        230        240 
PLAKGSHRDA VSYTVDGNKL SIKLKDGSTT GLADEKQFVG YQGDAAAPSS ILLRNNGVHI 

       250        260        270        280        290        300 
DIEIDKSKTI GSGDPAGIND VVLEAALSTI LDLEDSIAAV DGDDKVLAYE NWLGILKGTL 

       310        320        330        340        350        360 
VEEVSKGGKT ITRALNPDRK YKAGIGAVNA KDGVVTLHGR SLLFLRNVGH LMTNPAIITG 

       370        380        390        400        410        420 
EGKEIYEGIL DAVVTVLIAL YDINRPATQA IGNTRKGSVY IVKPKMHSPE EVAFAGELFG 

       430        440        450        460        470        480 
RVEKLLGLPA NTVKLGIMDE ERRMSANIKA AIAAAGARVA FINTGFLDRT GDEMHTSMYA 

       490        500        510        520        530        540 
GPMIRKGDMK ASKWLSAYER RNVFAGLDCG LRGRAQIGKG MWAMPDLMKA MVEQKIVHPK 

       550        560        570        580        590        600 
AGANTAWVPS PTAATLHALH YHQVNVAELQ KEMEKVDTAA EAEALLNDLL TIPVAEQANW 

       610        620        630        640        650        660 
SKEEIQQELD NNCQGILGYV VRWIDQGVGC SKVPDIHNVG LMEDRATLRI SSQHIANWLL 

       670        680        690        700        710        720 
HGVVTADQVN ETLQRMAKVV DGQNAGDSLY KPMMPHYKDS YAYKAASDLI FKGLEQPNGY 

       730 
TEPLLHAWRL EVKKANA

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References

[1]"Complete sequence of Polynucleobacter sp. QLW-P1DMWA-1."
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Meincke L., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Mikhailova N., Poeckl M., Wu Q.L., Hahn M., Richardson P.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: QLW-P1DMWA-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000655 Genomic DNA. Translation: ABP34494.1.
RefSeqYP_001156058.1. NC_009379.1.

3D structure databases

ProteinModelPortalA4SYD0.
SMRA4SYD0. Positions 10-735.
ModBaseSearch...

Protein-protein interaction databases

STRINGA4SYD0.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5052182.
GenomeReviewsGene locus Pnuc_1280 in contig CP000655_GR.
KEGGpnu:Pnuc_1280.
PATRIC22967043. VBIPolNec12025_1329.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2225.
HOGENOMHBG350005.
OMAENANWSV.
PhylomeDBA4SYD0.
ProtClustDBPRK02999.

Enzyme and pathway databases

BioCycPSP312153:PNUC_1280-MONOMER.

Family and domain databases

HAMAPMF_00641. Malate_synth_G.
[Tree]
InterProIPR011076. Malate_synth-like.
IPR023310. Malate_synth_G_beta_sub_dom.
IPR001465. Malate_synthase.
IPR006253. Malate_synthG.
[Graphical view]
Gene3DG3DSA:2.170.170.11. Malate_synth_G_beta_sub_dom. 2 hits.
KOK01638.
PANTHERPTHR21631:SF1. Malate_synthase. 1 hit.
PfamPF01274. Malate_synthase. 1 hit.
[Graphical view]
SUPFAMSSF51645. Malat_synth_like. 1 hit.
TIGRFAMsTIGR01345. Malate_syn_G. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA4SYD0_POLSQ
AccessionPrimary (citable) accession number: A4SYD0
Entry history
Integrated into UniProtKB/TrEMBL: May 15, 2007
Last sequence update: May 15, 2007
Last modified: December 14, 2011
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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