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A4SHC8 (A4SHC8_AERS4) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribonuclease PH HAMAP-Rule MF_00564
Short name=RNase PH HAMAP-Rule MF_00564
EC=2.7.7.56 HAMAP-Rule MF_00564
Alternative name(s):
tRNA nucleotidyltransferase HAMAP-Rule MF_00564
Gene names
Name:rph HAMAP-Rule MF_00564 EMBL ABO88300.1
Ordered Locus Names:ASA_0101 EMBL ABO88300.1
OrganismAeromonas salmonicida (strain A449) [Complete proteome] [HAMAP] EMBL ABO88300.1
Taxonomic identifier382245 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Aeromonadales › Aeromonadaceae › Aeromonas ›

Protein attributes

Sequence length240 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. HAMAP-Rule MF_00564 SAAS SAAS002381

Catalytic activity

tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. HAMAP-Rule MF_00564 SAAS SAAS002381

Sequence similarities

Belongs to the RNase PH family. HAMAP-Rule MF_00564

Sequences

Sequence LengthMass (Da)Tools
A4SHC8 [UniParc].

Last modified May 15, 2007. Version 1.
Checksum: FA24337A45C57E59

FASTA24025,845
        10         20         30         40         50         60 
MSRPSDRSAA QLRPVTITRN FTKHAEGSVL VEFGNTRVLC TASVDTSVPR FLKGKGQGWV 

        70         80         90        100        110        120 
TAEYGMLPRS THSRMNREAA AGKQSGRTLE ISRLIARSLR AAVDLTALGE HSITVDCDVL 

       130        140        150        160        170        180 
QADGGTRTAS ITGACVALVD ALNWMVEKGM IKQSPLKQMI AAVSVGMYQG EAICDLEYIE 

       190        200        210        220        230        240 
DSAAETDMNV VMTEDGRIIE VQGTAEAEPF THEELLAMLG LAKGGIEEII ALQKQSLSLF

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References

[1]"The genome of Aeromonas salmonicida subsp. salmonicida A449: insights into the evolution of a fish pathogen."
Reith M.E., Singh R.K., Curtis B., Boyd J.M., Bouevitch A., Kimball J., Munholland J., Murphy C., Sarty D., Williams J., Nash J.H., Johnson S.C., Brown L.L.
BMC Genomics 9:427-427(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: A449.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000644 Genomic DNA. Translation: ABO88300.1.
RefSeqYP_001140048.1. NC_009348.1.

3D structure databases

ProteinModelPortalA4SHC8.
SMRA4SHC8. Positions 1-238.
ModBaseSearch...

Protein-protein interaction databases

STRING382245.ASA_0101.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABO88300; ABO88300; ASA_0101.
GeneID4998600.
KEGGasa:ASA_0101.
PATRIC20786494. VBIAerSal2987_0112.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0689.
HOGENOMHOG000229516.
KOK00989.
OMAMLPRATG.
ProtClustDBCLSK728579.

Enzyme and pathway databases

BioCycASAL382245:GJJN-99-MONOMER.

Family and domain databases

HAMAPMF_00564. RNase_PH.
InterProIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR002381. RNase_PH_bac-type.
IPR018336. RNase_PH_CS.
[Graphical view]
PfamPF01138. RNase_PH. 1 hit.
PF03725. RNase_PH_C. 1 hit.
[Graphical view]
SUPFAMSSF55666. 3_ExoRNase. 1 hit.
SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMsTIGR01966. RNasePH. 1 hit.
PROSITEPS01277. RIBONUCLEASE_PH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA4SHC8_AERS4
AccessionPrimary (citable) accession number: A4SHC8
Entry history
Integrated into UniProtKB/TrEMBL: May 15, 2007
Last sequence update: May 15, 2007
Last modified: May 1, 2013
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info