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Protein

Probable pyruvoyl-dependent arginine decarboxylase

Gene

pdaD

Organism
Chlorobium phaeovibrioides (strain DSM 265 / 1930) (Prosthecochloris vibrioformis (strain DSM 265))
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

L-arginine = agmatine + CO2.UniRule annotation

Cofactori

pyruvateUniRule annotationNote: Binds 1 pyruvoyl group covalently per subunit.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDecarboxylase, Lyase
LigandPyruvate

Enzyme and pathway databases

BioCyciCPHA290318:G1G8E-1272-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Probable pyruvoyl-dependent arginine decarboxylaseUniRule annotation (EC:4.1.1.19UniRule annotation)
Short name:
PvlArgDCUniRule annotation
Cleaved into the following 2 chains:
Pyruvoyl-dependent arginine decarboxylase subunit betaUniRule annotation
Pyruvoyl-dependent arginine decarboxylase subunit alphaUniRule annotation
Gene namesi
Name:pdaDUniRule annotation
Ordered Locus Names:Cvib_1209
OrganismiChlorobium phaeovibrioides (strain DSM 265 / 1930) (Prosthecochloris vibrioformis (strain DSM 265))
Taxonomic identifieri290318 [NCBI]
Taxonomic lineageiBacteriaChlorobiChlorobiaChlorobialesChlorobiaceaeChlorobium/Pelodictyon groupChlorobium
Proteomesi
  • UP000006700 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000873731 – 42Pyruvoyl-dependent arginine decarboxylase subunit betaUniRule annotationAdd BLAST42
ChainiPRO_100008737443 – 181Pyruvoyl-dependent arginine decarboxylase subunit alphaUniRule annotationAdd BLAST139

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei43Pyruvic acid (Ser)UniRule annotation1

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sitei42 – 43Cleavage (non-hydrolytic)UniRule annotation2

Interactioni

Protein-protein interaction databases

STRINGi290318.Cvib_1209

Structurei

3D structure databases

ProteinModelPortaliA4SFG2
SMRiA4SFG2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the PdaD family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108JEJ Bacteria
COG1945 LUCA
HOGENOMiHOG000012204
KOiK02626
OMAiSEHHSFG
OrthoDBiPOG091H1TJJ

Family and domain databases

Gene3Di3.50.20.10, 1 hit
HAMAPiMF_01404 PvlArgDC, 1 hit
InterProiView protein in InterPro
IPR016104 Pyr-dep_his/arg-deCO2ase
IPR016105 Pyr-dep_his/arg-deCO2ase_sand
IPR002724 Pyruvoyl-dep_arg_deCO2ase
PANTHERiPTHR40438 PTHR40438, 1 hit
PfamiView protein in Pfam
PF01862 PvlArgDC, 1 hit
PIRSFiPIRSF005216 Pyruvoyl-dep_arg_deCO2ase, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD010449 Pyruvoyl-dep_arg_deCO2ase, 1 hit
SFLDiSFLDG01170 Pyruvoyl-dependent_arginine_de, 1 hit
SUPFAMiSSF56271 SSF56271, 1 hit
TIGRFAMsiTIGR00286 TIGR00286, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A4SFG2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSFVPTKVFF TKGVGRHKEY LSSFELALRD AKIEKCNLVT VSSIFPPKCE
60 70 80 90 100
RISVEEGIKL LTPGQITFAV MARNSTNEYN RLMAASIGVA IPADDTQYGY
110 120 130 140 150
LSEHHPFGED EEQSGEYAED LAATMLATTL GIEFDPNKDW DEREGIYKMS
160 170 180
GKIINSYNIT QSAEGENGLW TTVISCAVLL P
Length:181
Mass (Da):20,070
Last modified:May 15, 2007 - v1
Checksum:i6B2A4FB6EA6A6CD0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000607 Genomic DNA Translation: ABP37221.1
RefSeqiWP_011890444.1, NC_009337.1

Genome annotation databases

EnsemblBacteriaiABP37221; ABP37221; Cvib_1209
KEGGipvi:Cvib_1209

Similar proteinsi

Entry informationi

Entry nameiPDAD_CHLPM
AccessioniPrimary (citable) accession number: A4SFG2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: May 15, 2007
Last modified: April 25, 2018
This is version 62 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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