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A4SFG2

- PDAD_PROVI

UniProt

A4SFG2 - PDAD_PROVI

Protein

Probable pyruvoyl-dependent arginine decarboxylase

Gene

pdaD

Organism
Prosthecochloris vibrioformis (strain DSM 265) (Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)) (Chlorobium phaeovibrioides (strain DSM 265))
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 45 (01 Oct 2014)
      Sequence version 1 (15 May 2007)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    L-arginine = agmatine + CO2.UniRule annotation

    Cofactori

    Pyruvoyl group.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sitei42 – 432Cleavage (non-hydrolytic)UniRule annotation

    GO - Molecular functioni

    1. arginine decarboxylase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. arginine catabolic process Source: InterPro

    Keywords - Molecular functioni

    Decarboxylase, Lyase

    Keywords - Ligandi

    Pyruvate

    Enzyme and pathway databases

    BioCyciCPHA290318:GHNQ-1243-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable pyruvoyl-dependent arginine decarboxylaseUniRule annotation (EC:4.1.1.19UniRule annotation)
    Short name:
    PvlArgDCUniRule annotation
    Cleaved into the following 2 chains:
    Pyruvoyl-dependent arginine decarboxylase subunit betaUniRule annotation
    Pyruvoyl-dependent arginine decarboxylase subunit alphaUniRule annotation
    Gene namesi
    Name:pdaDUniRule annotation
    Ordered Locus Names:Cvib_1209
    OrganismiProsthecochloris vibrioformis (strain DSM 265) (Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)) (Chlorobium phaeovibrioides (strain DSM 265))
    Taxonomic identifieri290318 [NCBI]
    Taxonomic lineageiBacteriaChlorobiChlorobiaChlorobialesChlorobiaceaeChlorobium/Pelodictyon groupChlorobium
    ProteomesiUP000006700: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 4242Pyruvoyl-dependent arginine decarboxylase subunit betaUniRule annotationPRO_1000087373Add
    BLAST
    Chaini43 – 181139Pyruvoyl-dependent arginine decarboxylase subunit alphaUniRule annotationPRO_1000087374Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei43 – 431Pyruvic acid (Ser)UniRule annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi290318.Cvib_1209.

    Structurei

    3D structure databases

    ProteinModelPortaliA4SFG2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the PdaD family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1945.
    HOGENOMiHOG000012204.
    KOiK02626.
    OMAiYKMSGKI.
    OrthoDBiEOG6JHRMR.

    Family and domain databases

    Gene3Di3.50.20.10. 1 hit.
    HAMAPiMF_01404. PvlArgDC.
    InterProiIPR016104. Pyr-dep_his/arg-deCO2ase.
    IPR016105. Pyr-dep_his/arg-deCO2ase_sand.
    IPR002724. Pyruvoyl-dep_arg_deCO2ase.
    [Graphical view]
    PfamiPF01862. PvlArgDC. 1 hit.
    [Graphical view]
    PIRSFiPIRSF005216. Pyruvoyl-dep_arg_deCO2ase. 1 hit.
    ProDomiPD010449. Pyruvoyl-dep_arg_deCO2ase. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SUPFAMiSSF56271. SSF56271. 1 hit.
    TIGRFAMsiTIGR00286. TIGR00286. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    A4SFG2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSFVPTKVFF TKGVGRHKEY LSSFELALRD AKIEKCNLVT VSSIFPPKCE    50
    RISVEEGIKL LTPGQITFAV MARNSTNEYN RLMAASIGVA IPADDTQYGY 100
    LSEHHPFGED EEQSGEYAED LAATMLATTL GIEFDPNKDW DEREGIYKMS 150
    GKIINSYNIT QSAEGENGLW TTVISCAVLL P 181
    Length:181
    Mass (Da):20,070
    Last modified:May 15, 2007 - v1
    Checksum:i6B2A4FB6EA6A6CD0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000607 Genomic DNA. Translation: ABP37221.1.
    RefSeqiWP_011890444.1. NC_009337.1.
    YP_001130723.1. NC_009337.1.

    Genome annotation databases

    EnsemblBacteriaiABP37221; ABP37221; Cvib_1209.
    GeneIDi4970178.
    KEGGipvi:Cvib_1209.
    PATRICi21396890. VBIChlPha132153_1275.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000607 Genomic DNA. Translation: ABP37221.1 .
    RefSeqi WP_011890444.1. NC_009337.1.
    YP_001130723.1. NC_009337.1.

    3D structure databases

    ProteinModelPortali A4SFG2.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 290318.Cvib_1209.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABP37221 ; ABP37221 ; Cvib_1209 .
    GeneIDi 4970178.
    KEGGi pvi:Cvib_1209.
    PATRICi 21396890. VBIChlPha132153_1275.

    Phylogenomic databases

    eggNOGi COG1945.
    HOGENOMi HOG000012204.
    KOi K02626.
    OMAi YKMSGKI.
    OrthoDBi EOG6JHRMR.

    Enzyme and pathway databases

    BioCyci CPHA290318:GHNQ-1243-MONOMER.

    Family and domain databases

    Gene3Di 3.50.20.10. 1 hit.
    HAMAPi MF_01404. PvlArgDC.
    InterProi IPR016104. Pyr-dep_his/arg-deCO2ase.
    IPR016105. Pyr-dep_his/arg-deCO2ase_sand.
    IPR002724. Pyruvoyl-dep_arg_deCO2ase.
    [Graphical view ]
    Pfami PF01862. PvlArgDC. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF005216. Pyruvoyl-dep_arg_deCO2ase. 1 hit.
    ProDomi PD010449. Pyruvoyl-dep_arg_deCO2ase. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SUPFAMi SSF56271. SSF56271. 1 hit.
    TIGRFAMsi TIGR00286. TIGR00286. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Prosthecochloris vibrioformis DSM 265."
      US DOE Joint Genome Institute
      Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Schmutz J., Larimer F., Land M., Hauser L., Mikhailova N., Li T., Overmann J., Schuster S.C., Bryant D.A., Richardson P.
      Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 265.

    Entry informationi

    Entry nameiPDAD_PROVI
    AccessioniPrimary (citable) accession number: A4SFG2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 20, 2008
    Last sequence update: May 15, 2007
    Last modified: October 1, 2014
    This is version 45 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3