A4SE88 (A4SE88_PROVI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Lytic transglycosylase, catalytic EMBL ABP36797.1

Gene names

Ordered Locus Names:

Cvib_0782

Organism

Prosthecochloris vibrioformis (strain DSM 265) (Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)) (Chlorobium phaeovibrioides (strain DSM 265)) [Complete proteome] [HAMAP]

Taxonomic identifier

290318 [NCBI]

Taxonomic lineage

Bacteria › Chlorobi › Chlorobia › Chlorobiales › Chlorobiaceae › Chlorobium/Pelodictyon group › Chlorobium

Protein attributes

Sequence length	503 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABP36797.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cell wall macromolecule catabolic process Inferred from electronic annotation. Source: InterPro peptidoglycan metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	membrane Inferred from electronic annotation. Source: InterPro
Molecular function	lytic transglycosylase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 35	35	Potential EMBL ABP36797.1
	Chain	36 – 503	468	Potential EMBL ABP36797.1		PRO_5000235231

Sequences

	Sequence		Length	Mass (Da)
	A4SE88 [UniParc]. Last modified May 15, 2007. Version 1. Checksum: CD2C4996DEFDD05D	FASTA	503	56,246
	10 20 30 40 50 60 MLVSSLNNRI FMSFFRCICV AFLFACIPLR NISAAENAAP SVVFSSASLS QSLDSLMNAT 70 80 90 100 110 120 YFSDEHFASP SGKSAMPGFP STFVPQYSDS VYTARIAELN SRTRFELTYN KYVKGFIRVY 130 140 150 160 170 180 AVDKRLATAK ILGLREVYFP LFEEALAIYG VPPEMKYLAI VESALNPTAV SRAGARGLWQ 190 200 210 220 230 240 FMYPTGKMYG LESSAFIEDR FDPRKASMAA ARHLRDLYDR YGDWFLALAA YNSGSGNVNR 250 260 270 280 290 300 AIRRSRGGKD YWAIWRYLPA ETRGYVPAFI AVNYIMNYHQ EHNLLPLRPG YLYQDIENVS 310 320 330 340 350 360 VMRPLSFERI SAAVGISVED LRFLNPQYTH GIIPSSVDSP HELRLPKHHA TSFAAVETRL 370 380 390 400 410 420 YDALSIPVPD SSAVAESVTP DSIRVSFVAV APRLLSYKVK RGETLAVIAR RHDTTEGRLM 430 440 450 460 470 480 ELNGLGSPAS LFPGQILKIE KVSGGGLLVK KGVVVKYHRV RRGETLGKIA RKYRVSMARL 490 500 ASWNRLRGKK VIYPGQKLRV TAP

References

[1]

"Complete sequence of Prosthecochloris vibrioformis DSM 265." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Schmutz J., Larimer F., Land M., Hauser L., Mikhailova N., Li T., Overmann J., Schuster S.C., Bryant D.A., Richardson P. Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 265.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000607 Genomic DNA. Translation: ABP36797.1.
RefSeq	YP_001130299.1. NC_009337.1.
3D structure databases
ProteinModelPortal	A4SE88.
ModBase	Search...
Protein-protein interaction databases
STRING	A4SE88.
Protein family/group databases
CAZy	GH23. Glycoside Hydrolase Family 23.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4970196.
GenomeReviews	Gene locus Cvib_0782 in contig CP000607_GR.
KEGG	pvi:Cvib_0782.
PATRIC	21395956. VBIChlPha132153_0824.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0741.
HOGENOM	HBG405807.
OMA	SLYLHYI.
PhylomeDB	A4SE88.
ProtClustDB	CLSK2391537.
Family and domain databases
InterPro	IPR023346. Lysozyme-like_dom. IPR008258. Lytic_TGlycosylase-like_cat. IPR018392. Peptidoglycan-bd_lysin. IPR002482. Peptidoglycan-bd_Lysin_subgr. IPR000189. Transglyc_AS. [Graphical view]
KO	K08307.
Pfam	PF01476. LysM. 2 hits. PF01464. SLT. 1 hit. [Graphical view]
SMART	SM00257. LysM. 2 hits. [Graphical view]
SUPFAM	SSF53955. SSF53955. 1 hit.
PROSITE	PS00922. TRANSGLYCOSYLASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A4SE88_PROVI

Accession

Primary (citable) accession number: A4SE88

Entry history

Integrated into UniProtKB/TrEMBL:	May 15, 2007
Last sequence update:	May 15, 2007
Last modified:	December 14, 2011
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)