A4S5U9 (A4S5U9_OSTLU) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribonuclease RuleBase RU003515
EC=3.1.26.- RuleBase RU003515

Gene names

ORF Names:

OSTLU_7887 EMBL ABO98967.1

Organism

Ostreococcus lucimarinus (strain CCE9901) [Complete proteome]

Taxonomic identifier

436017 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Chlorophyta › Mamiellophyceae › Mamiellales › Ostreococcus

Protein attributes

Sequence length	189 AA.
Sequence status	Fragment.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Endonuclease that specifically degrades the RNA of RNA-DNA hybrids By similarity. RuleBase RU003515
Catalytic activity	Endonucleolytic cleavage to 5'-phosphomonoester. RuleBase RU003515
Sequence similarities	Belongs to the RNase HII family. RuleBase RU003515

Ontologies

Keywords
Molecular function	Endonuclease RuleBase RU003515 Hydrolase Nuclease
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	RNA binding Inferred from electronic annotation. Source: InterPro ribonuclease H activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL ABO98967.1
	Non-terminal residue	189	1	EMBL ABO98967.1

Sequences

	Sequence		Length	Mass (Da)
	A4S5U9 [UniParc]. Last modified May 15, 2007. Version 1. Checksum: 82CA9D26A2CAFA42	FASTA	189	20,985
	10 20 30 40 50 60 HEKKHWEAGR HRVVGVDEAG RGPLAGPVVA AACFVPKDCV VDCVNDSKQL TEEGREEIFE 70 80 90 100 110 120 ELMANKDIEY GVCVIDQDRI DEINILECTM EAMHRSAADV PNVDWVLIDG NRVPKPLEGK 130 140 150 160 170 180 AEAIVKGDAK NVAIAAASII AKVTRDRMML EIDKEFPMYG FKDHKGYGTK AHMAAIDKHG PCVYHRKTF

References

[1]

"The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation." Palenik B., Grimwood J., Aerts A., Rouze P., Salamov A., Putnam N., Dupont C., Jorgensen R., Derelle E., Rombauts S., Zhou K., Otillar R., Merchant S.S., Podell S., Gaasterland T., Napoli C., Gendler K., Manuell A. , Tai V., Vallon O., Piganeau G., Jancek S., Heijde M., Jabbari K., Bowler C., Lohr M., Robbens S., Werner G., Dubchak I., Pazour G.J., Ren Q., Paulsen I., Delwiche C., Schmutz J., Rokhsar D., Van de Peer Y., Moreau H., Grigoriev I.V. Proc. Natl. Acad. Sci. U.S.A. 104:7705-7710(2007) [PubMed: 17460045] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000592 Genomic DNA. Translation: ABO98967.1.
RefSeq	XP_001420674.1. XM_001420637.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	A4S5U9.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5004693.
KEGG	olu:OSTLU_7887.
Phylogenomic databases
HOGENOM	HBG584843.
OMA	RLGPTPI.
PhylomeDB	A4S5U9.
ProtClustDB	CLSN2701387.
Family and domain databases
HAMAP	MF_00052_B. RNase_HII_B. [Tree]
InterPro	IPR022898. RNase_HII. IPR001352. RNase_HII/HIII. IPR024567. RNase_HII/HIII_dom. IPR012337. RNaseH-like_dom. [Graphical view]
KO	K03470.
PANTHER	PTHR10954. RNase_HII/HIII. 1 hit.
Pfam	PF01351. RNase_HII. 1 hit. [Graphical view]
SUPFAM	SSF53098. RNaseH_fold. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A4S5U9_OSTLU

Accession

Primary (citable) accession number: A4S5U9

Entry history

Integrated into UniProtKB/TrEMBL:	May 15, 2007
Last sequence update:	May 15, 2007
Last modified:	December 14, 2011
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)