Predicted protein - Ostreococcus lucimarinus (strain CCE9901)

Preferred order of sections

Names and origin

Protein names

Submitted name:
Predicted protein EMBL ABO98602.1

Gene names

ORF Names:

OSTLU_26493 EMBL ABO98602.1

Organism

Ostreococcus lucimarinus (strain CCE9901) [Complete proteome]

Taxonomic identifier

436017 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Chlorophyta › Mamiellophyceae › Mamiellales › Ostreococcus ›

Protein attributes

Sequence length	994 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

A4S4Q6 [UniParc].

Last modified May 15, 2007. Version 1.
Checksum: 7FE77DE6D70931E3
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FASTA

994

112,295

        10         20         30         40         50         60 
MDDVANDSGH RLGTRDGGDD DDDDAEEDGA RLTSEPSTSG ASLRYATARD VPFRKLCGAF 

        70         80         90        100        110        120 
EALQNERGRS KATSARRYRV LDTLHDRCLV SARDGTRVDA FDAYRLILPA LDKERGAYFL 

       130        140        150        160        170        180 
KHDALAKVVV SAFDMSRASE DAKKLEDWKR KGGGNFPQVV RDVLAGGHLA DREKDEDART 

       190        200        210        220        230        240 
LTIGDVNEAL DALAACDNKD QRASTLRALF SKMDATQVKW TCAIILKETK ISMGEKAILR 

       250        260        270        280        290        300 
HYHSEANDLW DWTSDLRRVC EDLPRRDFRM KREDIDVGVG LINPQMARRQ NSIDAVYRAL 

       310        320        330        340        350        360 
KGTQFVIETK FDGERIQIHK DGDIINYWTR NMNDFGPRGY DVMNALFRHL PKRCILDGEL 

       370        380        390        400        410        420 
MVWNKLRDQS YPFGALKNLI KAANMRKAKD ELFPLKAHLE NRDGGDSDGE EDLMSSKYAW 

       430        440        450        460        470        480 
YAENVKKLTY GDLELVYVPF DILYAVDRSV KTHKLRERHE LLKEHVREVS VMCGNIRARI 

       490        500        510        520        530        540 
LLATPDCAFS RVGSTKEDIE RALLEAMDNG EEGLVIKDLD GPWIPGDRSN NWMKIKPDYL 

       550        560        570        580        590        600 
SSEDLDVVLI GGYYGAGELR GGKISQFLCG IVEATNDPIS TASDGVKIMS FCKVGTGISA 

       610        620        630        640        650        660 
MQLDDLRSRL GDFMHREKPQ DMNYNVTDAY NEKPDVWIWP PQRSLVVTVK GDIRAIRTTT 

       670        680        690        700        710        720 
FATGYSLRFP RVTGIRYDKK WSDILTLCDL LKTIEEEVPT LKVNIDDTRG GTNARKRSRT 

       730        740        750        760        770        780 
TGPATLLPAH LMPVDVSGVV QESEIFKNMQ VHIANCESRE QKQELFKAVI ARSGTTSELW 

       790        800        810        820        830        840 
HKHVTHSVAL NRDGSKFRTA SREGDVYTIA WLQECIHEGR VVPPKPRHRL HLSATTWYGT 

       850        860        870        880        890        900 
DAMDRYGDDH FSDCNLADVH ALVHQVGDQT KRWKTAEVPA LVELDREYPS VCADVKLLTF 

       910        920        930        940        950        960 
RGCVFEIDDS LGKDARVDEQ SSMFPSVLAG ERRNVEQILR IYGGKLAPEG RMGTHIVRMY 

       970        980        990 
DDSVVFEDMD DGRKQVSLSW VKRCIDRSTT ADVV

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References

[1]

"The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation."
Palenik B., Grimwood J., Aerts A., Rouze P., Salamov A., Putnam N., Dupont C., Jorgensen R., Derelle E., Rombauts S., Zhou K., Otillar R., Merchant S.S., Podell S., Gaasterland T., Napoli C., Gendler K., Manuell A.

Grigoriev I.V.
Proc. Natl. Acad. Sci. U.S.A. 104:7705-7710(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCE9901.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000591 Genomic DNA. Translation: ABO98602.1.
RefSeq	XP_001420309.1. XM_001420272.1.
3D structure databases
ProteinModelPortal	A4S4Q6.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5004601.
KEGG	olu:OSTLU_26493.
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000265334.
KO	K10777.
OMA	CESREQK.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR001357. BRCT_dom. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SMART	SM00292. BRCT. 1 hit. [Graphical view]
SUPFAM	SSF52113. BRCT. 1 hit. SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS50172. BRCT. 2 hits. PS00697. DNA_LIGASE_A1. 1 hit. PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A4S4Q6_OSTLU

Accession

Primary (citable) accession number: A4S4Q6

Entry history

Integrated into UniProtKB/TrEMBL:	May 15, 2007
Last sequence update:	May 15, 2007
Last modified:	March 6, 2013
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Preferred order of sections

Names and origin

Protein attributes

Ontologies

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Family and domain databases

Entry information