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Protein

Uncharacterized protein C5orf49

Gene

C5orf49

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein C5orf49
Gene namesi
Name:C5orf49
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 5

Organism-specific databases

HGNCiHGNC:27028. C5orf49.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA162380347.

Polymorphism and mutation databases

BioMutaiC5orf49.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 147147Uncharacterized protein C5orf49PRO_0000336090Add
BLAST

Proteomic databases

PaxDbiA4QMS7.
PRIDEiA4QMS7.

PTM databases

PhosphoSiteiA4QMS7.

Expressioni

Gene expression databases

BgeeiA4QMS7.
CleanExiHS_C5orf49.
ExpressionAtlasiA4QMS7. baseline and differential.
GenevisibleiA4QMS7. HS.

Organism-specific databases

HPAiHPA043759.

Structurei

3D structure databases

ProteinModelPortaliA4QMS7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG45406.
GeneTreeiENSGT00390000015121.
HOGENOMiHOG000111518.
HOVERGENiHBG095480.
InParanoidiA4QMS7.
OMAiGRVNHVQ.
OrthoDBiEOG7T4MNP.
PhylomeDBiA4QMS7.
TreeFamiTF328385.

Family and domain databases

InterProiIPR027901. DUF4541.
[Graphical view]
PfamiPF15074. DUF4541. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4QMS7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEDDEEETTA STLRGKPRPP PVSAQSAFSY IPPRRLDPKE HSYYYRPART
60 70 80 90 100
GIISLYDCIF KRRLDYDQKL HRDDREHAKS LGLHVNEEEQ ERPVGVLTSS
110 120 130 140
VYGKRINQPI EPLNRDFGRA NHVQADFYRK NDIPSLKEPG FGHIAPS
Length:147
Mass (Da):16,991
Last modified:May 15, 2007 - v1
Checksum:i7062F33544448479
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti68 – 681Q → H.
Corresponds to variant rs6883562 [ dbSNP | Ensembl ].
VAR_043546
Natural varianti87 – 871E → K.
Corresponds to variant rs16879215 [ dbSNP | Ensembl ].
VAR_043547
Natural varianti139 – 1391P → S.
Corresponds to variant rs326181 [ dbSNP | Ensembl ].
VAR_043548

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CH471102 Genomic DNA. Translation: EAX08096.1.
BC104205 mRNA. Translation: AAI04206.1.
BC115361 mRNA. Translation: AAI15362.1.
CCDSiCCDS43300.1.
RefSeqiNP_001083053.1. NM_001089584.2.
UniGeneiHs.709979.

Genome annotation databases

EnsembliENST00000399810; ENSP00000382708; ENSG00000215217.
GeneIDi134121.
KEGGihsa:134121.
UCSCiuc003jea.5. human.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CH471102 Genomic DNA. Translation: EAX08096.1.
BC104205 mRNA. Translation: AAI04206.1.
BC115361 mRNA. Translation: AAI15362.1.
CCDSiCCDS43300.1.
RefSeqiNP_001083053.1. NM_001089584.2.
UniGeneiHs.709979.

3D structure databases

ProteinModelPortaliA4QMS7.
ModBaseiSearch...
MobiDBiSearch...

PTM databases

PhosphoSiteiA4QMS7.

Polymorphism and mutation databases

BioMutaiC5orf49.

Proteomic databases

PaxDbiA4QMS7.
PRIDEiA4QMS7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000399810; ENSP00000382708; ENSG00000215217.
GeneIDi134121.
KEGGihsa:134121.
UCSCiuc003jea.5. human.

Organism-specific databases

CTDi134121.
GeneCardsiGC05M007886.
HGNCiHGNC:27028. C5orf49.
HPAiHPA043759.
neXtProtiNX_A4QMS7.
PharmGKBiPA162380347.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG45406.
GeneTreeiENSGT00390000015121.
HOGENOMiHOG000111518.
HOVERGENiHBG095480.
InParanoidiA4QMS7.
OMAiGRVNHVQ.
OrthoDBiEOG7T4MNP.
PhylomeDBiA4QMS7.
TreeFamiTF328385.

Miscellaneous databases

GenomeRNAii134121.
NextBioi83318.
PROiA4QMS7.

Gene expression databases

BgeeiA4QMS7.
CleanExiHS_C5orf49.
ExpressionAtlasiA4QMS7. baseline and differential.
GenevisibleiA4QMS7. HS.

Family and domain databases

InterProiIPR027901. DUF4541.
[Graphical view]
PfamiPF15074. DUF4541. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].

Entry informationi

Entry nameiCE049_HUMAN
AccessioniPrimary (citable) accession number: A4QMS7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: May 15, 2007
Last modified: July 22, 2015
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 5
    Human chromosome 5: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.