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Protein
Submitted name:

Fusion protein SYT-SSX1

Gene

SYT-SSX1

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Fusion protein SYT-SSX1Imported
Gene namesi
Name:SYT-SSX1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiA4PIV7.
PRIDEiA4PIV7.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
SMARCA4P5153214EBI-6901002,EBI-302489

Protein-protein interaction databases

IntActiA4PIV7. 8 interactions.
STRINGi9606.ENSP00000414516.

Structurei

3D structure databases

ProteinModelPortaliA4PIV7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiKOG3227. Eukaryota.
ENOG41128HA. LUCA.
HOGENOMiHOG000048717.
HOVERGENiHBG003892.

Family and domain databases

InterProiIPR007726. SS18_fam.
IPR019041. SSXRD_motif.
[Graphical view]
PANTHERiPTHR23107. PTHR23107. 1 hit.
PfamiPF09514. SSXRD. 1 hit.
PF05030. SSXT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4PIV7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSVAFAAPRQ RGKGEITPAA IQKMLDDNNH LIQCIMDSQN KGKTSECSQY
60 70 80 90 100
QQMLHTNLVY LATIADSNQN MQSLLPAPPT QNMPMGPGGM NQSGPPPPPR
110 120 130 140 150
SHNMPSDGMV GGGPPAPHMQ NQMNGQMPGP NHMPMQGPGP NQLNMTNSSM
160 170 180 190 200
NMPSSSHGSM GGYNHSVPSS QSMPVQNQMT MSQGQPMGNY GPRPNMSMQP
210 220 230 240 250
NQGPMMHQQP PSQQYNMPQG GGQHYQGQQP PMGMMGQVNQ GNHMMGQRQI
260 270 280 290 300
PPYRPPQQGP PQQYSGQEDY YGDQYSHGGQ GPPEGMNQQY YPDGHNDYGY
310 320 330 340 350
QQPSYPEQGY DRPYEDSSQH YYEGGNSQYG QQQDAYQGPP PQQGYPPQQQ
360 370 380 390 400
QYPGQQGYPG QQQGYGPSQG GPGPQYPNYP QGQGQQYGGY RPTQPGPPQP
410 420 430 440 450
PQQRPYGYDQ IMPKKPAEDE NDSKGVSEAS GPQNDGKQLH PPGKANISEK
460 470 480
INKRSGPKRG KHAWTHRLRE RKQLVIYEEI SDPEEDDE
Length:488
Mass (Da):53,801
Last modified:May 15, 2007 - v1
Checksum:i8CD1A49A1724745C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB300354 mRNA. Translation: BAF56181.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB300354 mRNA. Translation: BAF56181.1.

3D structure databases

ProteinModelPortaliA4PIV7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiA4PIV7. 8 interactions.
STRINGi9606.ENSP00000414516.

Proteomic databases

PaxDbiA4PIV7.
PRIDEiA4PIV7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiKOG3227. Eukaryota.
ENOG41128HA. LUCA.
HOGENOMiHOG000048717.
HOVERGENiHBG003892.

Miscellaneous databases

NextBioi35461837.

Family and domain databases

InterProiIPR007726. SS18_fam.
IPR019041. SSXRD_motif.
[Graphical view]
PANTHERiPTHR23107. PTHR23107. 1 hit.
PfamiPF09514. SSXRD. 1 hit.
PF05030. SSXT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Fusion genes in Synovial Sarcoma cells."
    Ouchida M.
    Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiA4PIV7_HUMAN
AccessioniPrimary (citable) accession number: A4PIV7
Entry historyi
Integrated into UniProtKB/TrEMBL: May 15, 2007
Last sequence update: May 15, 2007
Last modified: March 16, 2016
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.