Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Type III secretion outer membrane pore, YscC/HrcC family

Gene

Bcep1808_5342

Organism
Burkholderia vietnamiensis (strain G4 / LMG 22486) (Burkholderia cepacia (strain R1808))
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Enzyme and pathway databases

BioCyciBVIE269482:GJNA-5425-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Type III secretion outer membrane pore, YscC/HrcC familyImported
Gene namesi
Ordered Locus Names:Bcep1808_5342Imported
OrganismiBurkholderia vietnamiensis (strain G4 / LMG 22486) (Burkholderia cepacia (strain R1808))Imported
Taxonomic identifieri269482 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
Proteomesi
  • UP000002287 Componenti: Chromosome 2

Subcellular locationi

  • Cell outer membrane UniRule annotation

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 4242Sequence analysisAdd
BLAST
Chaini43 – 679637Sequence analysisPRO_5002670251Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi269482.Bcep1808_5342.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini196 – 337142Secretin_NInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the GSP D family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiCOG1450. LUCA.
HOGENOMiHOG000214462.
KOiK03219.
OMAiNAVIVHD.
OrthoDBiPOG091H00DF.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR004845. T2SS_GspD_CS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.
PROSITEiPS00875. T2SP_D. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4JPT7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRRRVAPIRI QPRRLQRAAF AMCATALLAA ALCMTVAQPA RAADLRWRNK
60 70 80 90 100
PFTIVANGKK IGDFIRELAS SQGVTAVVDP KVDGVISGRF SGTPQQTLDT
110 120 130 140 150
ICSTYGLTWY YDGSFLYVDP ADQSQTQMIP IPPNAAGEIG RALQAMQIPD
160 170 180 190 200
KRYTLVINDR ANSVYVAGPR RYVELVRQAV GSVGDPSANG AHADIRAFRL
210 220 230 240 250
KYGWASDFTI NRSGKEVTVP GVASILRRLF GRDGSTSALP SSTPLGQAAR
260 270 280 290 300
QVKLGSGLTI AVPRLDFPDI SSGPRQGGYG GADSAAGGIS PFSAGGGGDA
310 320 330 340 350
LPQIVADPAI NAVIVRDLPE NMYRYQSLID QLDERPRIVE INVTIIDINE
360 370 380 390 400
DSLDSLGIDW RLHTTHGDVQ IGNGQNPLNG NTQYNGAGNP PLTFGIGASE
410 420 430 440 450
TGQTGTFMPT GIALTASIGG SLRNYLLTRV NALAQKGQAQ LRSKPKVLAL
460 470 480 490 500
DNTEAILENL TQFYVQVQGY QDSSLYSVTT GTSIKVTPMI VDEAIRHAAA
510 520 530 540 550
VSGTPQSVMM SIDIQDGNIV PGQAVSNVPV IQQRNIVTKT MIDEGKSLLI
560 570 580 590 600
AGFNDDEVRL NKSGVPWLSD IPLIGNLFKY TDKSGNHMER FYLLTPRVVT
610 620 630 640 650
NASMYAPDGS PVNPGADAPA DPNAMSMYRP PDNDVAVPLT PRPLPGTKFG
660 670
PPALPPPPDA ASQPVAATAG APAHVDDHH
Length:679
Mass (Da):72,333
Last modified:May 1, 2007 - v1
Checksum:i0BF494FBDDF97DBE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000615 Genomic DNA. Translation: ABO58290.1.
RefSeqiWP_011882611.1. NC_009255.1.

Genome annotation databases

EnsemblBacteriaiABO58290; ABO58290; Bcep1808_5342.
KEGGibvi:Bcep1808_5342.
PATRICi19318144. VBIBurVie89221_4086.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000615 Genomic DNA. Translation: ABO58290.1.
RefSeqiWP_011882611.1. NC_009255.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi269482.Bcep1808_5342.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABO58290; ABO58290; Bcep1808_5342.
KEGGibvi:Bcep1808_5342.
PATRICi19318144. VBIBurVie89221_4086.

Phylogenomic databases

eggNOGiCOG1450. LUCA.
HOGENOMiHOG000214462.
KOiK03219.
OMAiNAVIVHD.
OrthoDBiPOG091H00DF.

Enzyme and pathway databases

BioCyciBVIE269482:GJNA-5425-MONOMER.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR004845. T2SS_GspD_CS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.
PROSITEiPS00875. T2SP_D. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiA4JPT7_BURVG
AccessioniPrimary (citable) accession number: A4JPT7
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2007
Last sequence update: May 1, 2007
Last modified: September 7, 2016
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.