Skip Header

Contribute Send feedback
Read comments (?) or add your own

A4IXY1 (A4IXY1_FRATW) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Protein attributes

Sequence length605 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis By similarity. PIRNR PIRNR002811 SAAS SAAS013264

Cofactor

Binds 1 zinc ion per monomer By similarity. PIRSR PIRSR002811-1 PIRNR PIRNR002811

Subunit structure

Monomer By similarity. PIRSR PIRSR002811-1 PIRNR PIRNR002811 SAAS SAAS013264

Sequence similarities

Belongs to the DNA primase family. PIRNR PIRNR002811

Contains 1 Toprim domain. SAAS SAAS013264

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Zinc finger40 – 6425CHC2-type By similarity PIRSR PIRSR002811-1

Sequences

Sequence LengthMass (Da)Tools
A4IXY1 [UniParc].

Last modified May 1, 2007. Version 1.
Checksum: F1BCCF3F7FA82DB9

FASTA60569,051
        10         20         30         40         50         60 
MAKKVSNSFI KELVATADIV DVVSRYVNLK KTGKNYKGCC PFHNEKTPSF FVNPEKNFYH 

        70         80         90        100        110        120 
CFGCQASGDA LTFVKNINKL EFIDAVKNLA EIVGKPVEYE NYSQEDIQKE QLYNKCISFL 

       130        140        150        160        170        180 
AAAQKYYRWN LGNSVTKDKA INYLKKRGID SSLAKFFGIG YSSEGWNNIT ELAKSINIPE 

       190        200        210        220        230        240 
EILVDTGLAI KNDKGNLYDR FRGRVMFPIR NIQGNVIAYG GRVTEDSDGV KYINSPETLV 

       250        260        270        280        290        300 
FQKNNILYGL YEYRERKKQY PDLINQSLVV VEGYMDVVGL AQHGFYAAVA TLGTAFSPNH 

       310        320        330        340        350        360 
AKILFRETSS VILCFDGDEA GQKAALRTIK ILLPMLDGNK KLKILTLPDK DDPDDYIKKY 

       370        380        390        400        410        420 
GLERFLTALD NSLAVADFVI DNLIQGKDLR KAEAKAEVLE NLKNFLADVE DNIYSESITA 

       430        440        450        460        470        480 
TIADKIGIKV EQFKNLLKIR KQTTLNVNRQ QNIQQKKLAK NLLLEEFVLA ELFVNIADFR 

       490        500        510        520        530        540 
ILQHTNDFEI FATSKNLDIL AKSLKILKED SSNQIEAVIL IQLLAEDYPD YREYFFELLS 

       550        560        570        580        590        600 
YGIRNTQKKY AEDKYQEQMF VMLKRVENSS VKKRLKYLGS LPFRSDVQEM ERKYLVAKLG 


NSNII

« Hide

References

[1]"Complete genomic characterization of a pathogenic A.II strain of Francisella tularensis subspecies tularensis."
Beckstrom-Sternberg S.M., Auerbach R.K., Godbole S., Pearson J.V., Beckstrom-Sternberg J.S., Deng Z., Munk C., Kubota K., Zhou Y., Bruce D., Noronha J., Scheuermann R.H., Wang A., Wei X., Wang J., Hao J., Wagner D.M., Brettin T.S. expand/collapse author list , Brown N., Gilna P., Keim P.S.
PLoS ONE 2:E947-E947(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: WY96-3418.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000608 Genomic DNA. Translation: ABO46782.1.
RefSeqYP_001121903.1. NC_009257.1.

3D structure databases

ProteinModelPortalA4IXY1.
ModBaseSearch...

Protein-protein interaction databases

STRING418136.FTW_0945.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABO46782; ABO46782; FTW_0945.
GeneID4960450.
KEGGftw:FTW_0945.
PATRIC17969324. VBIFraTul58433_0974.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0358.
HOGENOMHOG000014483.
KOK02316.
OMALELVEVC.
ProtClustDBCLSK934812.

Enzyme and pathway databases

BioCycFTUL418136:GHXJ-1004-MONOMER.

Family and domain databases

Gene3D3.90.580.10. 1 hit.
3.90.980.10. 1 hit.
InterProIPR013264. DNA_primase_core_N.
IPR019475. DNA_primase_DnaB-bd.
IPR006295. DNA_primase_DnaG.
IPR006171. Toprim_domain.
IPR002694. Znf_CHC2.
[Graphical view]
PfamPF10410. DnaB_bind. 1 hit.
PF13662. Toprim_4. 1 hit.
PF08275. Toprim_N. 1 hit.
PF01807. zf-CHC2. 1 hit.
[Graphical view]
PIRSFPIRSF002811. DnaG. 1 hit.
SMARTSM00493. TOPRIM. 1 hit.
SM00400. ZnF_CHCC. 1 hit.
[Graphical view]
TIGRFAMsTIGR01391. dnaG. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA4IXY1_FRATW
AccessionPrimary (citable) accession number: A4IXY1
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2007
Last sequence update: May 1, 2007
Last modified: May 1, 2013
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info