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A4IQJ0 (A4IQJ0_GEOTN) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Phosphopentomutase HAMAP-Rule MF_00740
EC=5.4.2.7 HAMAP-Rule MF_00740
Alternative name(s):
Phosphodeoxyribomutase HAMAP-Rule MF_00740
Gene names
Name:deoB HAMAP-Rule MF_00740
Ordered Locus Names:GTNG_2245 EMBL ABO67594.1
OrganismGeobacillus thermodenitrificans (strain NG80-2) [Complete proteome] [HAMAP] EMBL ABO67594.1
Taxonomic identifier420246 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Geobacillus ›

Protein attributes

Sequence length395 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphotransfer between the C1 and C5 carbon atoms of pentose By similarity. HAMAP-Rule MF_00740 SAAS SAAS024052

Catalytic activity

2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate. HAMAP-Rule MF_00740 SAAS SAAS024052

Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate. HAMAP-Rule MF_00740 SAAS SAAS024052

Cofactor

Binds 1 or 2 manganese ions By similarity. HAMAP-Rule MF_00740 SAAS SAAS024052

Pathway

Metabolic intermediate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route II): step 1/3. HAMAP-Rule MF_00740 SAAS SAAS024052

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00740 SAAS SAAS024052.

Sequence similarities

Belongs to the phosphopentomutase family. HAMAP-Rule MF_00740

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding141Manganese By similarity HAMAP-Rule MF_00740
Metal binding2921Manganese By similarity HAMAP-Rule MF_00740
Metal binding3281Manganese By similarity HAMAP-Rule MF_00740
Metal binding3291Manganese By similarity HAMAP-Rule MF_00740
Metal binding3401Manganese By similarity HAMAP-Rule MF_00740

Sequences

Sequence LengthMass (Da)Tools
A4IQJ0 [UniParc].

Last modified May 1, 2007. Version 1.
Checksum: FC29347EEA1B092C

FASTA39544,050
        10         20         30         40         50         60 
MNTTYRRVFL IVLDSVGIGE APDAEKYNDK GADTLGHIAE HRGGLHMPNM AKLGLSHIRE 

        70         80         90        100        110        120 
IQGVPKVDHP LAYYTKMKEA SAGKDTMTGH WELMGLRIDK PFRVFPDGFP DELIAELERR 

       130        140        150        160        170        180 
TGRKVIGNKP ASGTAIIEEL GEEHMKTGAL IVYTSADSVL QIAAHEEVVP LDELYRICEI 

       190        200        210        220        230        240 
ARELTRDEPY MVGRVIARPF VGMPGRFERT PNRHDYALKP FGRTVMNELK DAGYDVIAIG 

       250        260        270        280        290        300 
KIADIYDNEG VTQSLRTASN MDGMDKLIDT LSMDFTGLSF VNLVDFDAKY GHRRDPQGYG 

       310        320        330        340        350        360 
DALEEFDARL AEVLPRLTTD DLLIITADHG NDPVHHGTDH TREYVPLLVY SPRFQGGKPL 

       370        380        390 
PIRETFADVG ATIADNFRVH MPPYGTSFLA ELAQQ

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References

[1]"Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir."
Feng L., Wang W., Cheng J., Ren Y., Zhao G., Gao C., Tang Y., Liu X., Han W., Peng X., Liu R., Wang L.
Proc. Natl. Acad. Sci. U.S.A. 104:5602-5607(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NG80-2 EMBL ABO67594.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000557 Genomic DNA. Translation: ABO67594.1.
RefSeqYP_001126339.1. NC_009328.1.

3D structure databases

ProteinModelPortalA4IQJ0.
SMRA4IQJ0. Positions 3-392.
ModBaseSearch...

Protein-protein interaction databases

STRING420246.GTNG_2245.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABO67594; ABO67594; GTNG_2245.
GeneID4967172.
KEGGgtn:GTNG_2245.
PATRIC21981009. VBIGeoThe136879_2366.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1015.
HOGENOMHOG000008159.
KOK01839.
OMAPNMAKLG.
ProtClustDBPRK05362.

Enzyme and pathway databases

BioCycGTHE420246:GIXT-2323-MONOMER.
UniPathwayUPA00087; UER00173.

Family and domain databases

Gene3D3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPMF_00740. Phosphopentomut.
InterProIPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view]
PfamPF01676. Metalloenzyme. 1 hit.
[Graphical view]
PIRSFPIRSF001491. Ppentomutase. 1 hit.
SUPFAMSSF53649. Alkaline_phosphatase_core. 1 hit.
SSF143856. SSF143856. 1 hit.
TIGRFAMsTIGR01696. deoB. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA4IQJ0_GEOTN
AccessionPrimary (citable) accession number: A4IQJ0
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2007
Last sequence update: May 1, 2007
Last modified: May 1, 2013
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info