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Protein

5-deoxy-glucuronate isomerase

Gene

iolB

Organism
Geobacillus thermodenitrificans (strain NG80-2)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Involved in the isomerization of 5-deoxy-glucuronate (5DG) to 5-dehydro-2-deoxy-D-gluconate (DKG or 2-deoxy-5-keto-D-gluconate).UniRule annotation

Catalytic activityi

5-deoxy-D-glucuronate = 5-dehydro-2-deoxy-D-gluconate.UniRule annotation

Pathwayi: myo-inositol degradation into acetyl-CoA

This protein is involved in step 4 of the subpathway that synthesizes acetyl-CoA from myo-inositol.UniRule annotation
Proteins known to be involved in the 7 steps of the subpathway in this organism are:
  1. no protein annotated in this organism
  2. Inosose dehydratase (iolE)
  3. 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase (iolD)
  4. 5-deoxy-glucuronate isomerase (iolB)
  5. 5-dehydro-2-deoxygluconokinase (iolC)
  6. no protein annotated in this organism
  7. Methylmalonate semialdehyde dehydrogenase [acylating] 1 (iolA1), Methylmalonate semialdehyde dehydrogenase [acylating] 2 (iolA2)
This subpathway is part of the pathway myo-inositol degradation into acetyl-CoA, which is itself part of Polyol metabolism.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes acetyl-CoA from myo-inositol, the pathway myo-inositol degradation into acetyl-CoA and in Polyol metabolism.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Isomerase

Enzyme and pathway databases

BioCyciGTHE420246:GIXT-1885-MONOMER.
RETL1328306-WGS:GSTH-1350-MONOMER.
UniPathwayiUPA00076; UER00920.

Names & Taxonomyi

Protein namesi
Recommended name:
5-deoxy-glucuronate isomeraseUniRule annotation (EC:5.3.1.30UniRule annotation)
Short name:
5DG isomeraseUniRule annotation
Gene namesi
Name:iolBUniRule annotation
Ordered Locus Names:GTNG_1808
OrganismiGeobacillus thermodenitrificans (strain NG80-2)
Taxonomic identifieri420246 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeGeobacillus
Proteomesi
  • UP000001578 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 2742745-deoxy-glucuronate isomerasePRO_0000352388Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi420246.GTNG_1808.

Structurei

3D structure databases

ProteinModelPortaliA4IPB4.
SMRiA4IPB4. Positions 11-265.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the isomerase IolB family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105DH8. Bacteria.
COG3718. LUCA.
HOGENOMiHOG000239754.
KOiK03337.
OMAiEGCTSSY.
OrthoDBiPOG091H0FEO.

Family and domain databases

Gene3Di2.60.120.10. 2 hits.
HAMAPiMF_01673. IolB. 1 hit.
InterProiIPR024203. Deoxy-glucuronate_isom_IolB.
IPR023770. IolB_Bacilli.
IPR021120. KduI/IolB_isomerase.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF04962. KduI. 1 hit.
[Graphical view]
PIRSFiPIRSF036628. IolB. 1 hit.
SUPFAMiSSF51182. SSF51182. 1 hit.
TIGRFAMsiTIGR04378. myo_inos_iolB. 1 hit.

Sequencei

Sequence statusi: Complete.

A4IPB4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRFIISSHS PNEEGNVVRV TPESAGWEYV GFEVYALTKG QTLRKETIDQ
60 70 80 90 100
EACLVLLKGK ANIHTRHERW ENIGLRMDVF EKIPPYSVYV PSNDVYEVQA
110 120 130 140 150
LTDLELAVCL APGKGTYPAR LIPPSEVGVE MRGAGNIERR IHNILPESKP
160 170 180 190 200
ADSLLVVEVF TPEGNWSSYP PHKHDQHNLP HESYLEETYY HQINPDHGFM
210 220 230 240 250
VQRVYTDDRS IDETMVVKNG DVVLVPKGYH PVSAPPGYEG YYLNVMAGPV
260 270
RTWKFRNDPD HEWVMESKLA AKQK
Length:274
Mass (Da):31,184
Last modified:May 1, 2007 - v1
Checksum:i3B73E28C860BA61E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000557 Genomic DNA. Translation: ABO67168.1.
RefSeqiWP_011887533.1. NC_009328.1.

Genome annotation databases

EnsemblBacteriaiABO67168; ABO67168; GTNG_1808.
KEGGigtn:GTNG_1808.
PATRICi21980085. VBIGeoThe136879_1911.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000557 Genomic DNA. Translation: ABO67168.1.
RefSeqiWP_011887533.1. NC_009328.1.

3D structure databases

ProteinModelPortaliA4IPB4.
SMRiA4IPB4. Positions 11-265.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi420246.GTNG_1808.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABO67168; ABO67168; GTNG_1808.
KEGGigtn:GTNG_1808.
PATRICi21980085. VBIGeoThe136879_1911.

Phylogenomic databases

eggNOGiENOG4105DH8. Bacteria.
COG3718. LUCA.
HOGENOMiHOG000239754.
KOiK03337.
OMAiEGCTSSY.
OrthoDBiPOG091H0FEO.

Enzyme and pathway databases

UniPathwayiUPA00076; UER00920.
BioCyciGTHE420246:GIXT-1885-MONOMER.
RETL1328306-WGS:GSTH-1350-MONOMER.

Family and domain databases

Gene3Di2.60.120.10. 2 hits.
HAMAPiMF_01673. IolB. 1 hit.
InterProiIPR024203. Deoxy-glucuronate_isom_IolB.
IPR023770. IolB_Bacilli.
IPR021120. KduI/IolB_isomerase.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF04962. KduI. 1 hit.
[Graphical view]
PIRSFiPIRSF036628. IolB. 1 hit.
SUPFAMiSSF51182. SSF51182. 1 hit.
TIGRFAMsiTIGR04378. myo_inos_iolB. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiIOLB_GEOTN
AccessioniPrimary (citable) accession number: A4IPB4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 14, 2008
Last sequence update: May 1, 2007
Last modified: September 7, 2016
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.