Reviewed, UniProtKB/Swiss-Prot A4IPA2 (ARAB_GEOTN)

Names and origin

Protein names

Recommended name:
    Ribulokinase
    EC=2.7.1.16

Gene names

Name:	araB
Ordered Locus Names:	GTNG_1796

Organism

Geobacillus thermodenitrificans (strain NG80-2) [Complete proteome] [HAMAP]

Taxonomic identifier

420246 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Bacillales › Bacillaceae › Geobacillus

Protein attributes

Sequence length	564 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Catalytic activity	ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate. HAMAP MF_00520
Pathway	Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 2/3. HAMAP MF_00520
Sequence similarities	Belongs to the ribulokinase family.

Ontologies

Keywords
Biological process	Arabinose catabolism Carbohydrate metabolism
Ligand	ATP-binding Nucleotide-binding
Molecular function	Kinase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	L-arabinose catabolic process Inferred from electronic annotation. Source: HAMAP
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ribulokinase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 564	564	Ribulokinase HAMAP MF_00520		PRO_1000050911

Sequences

	Sequence		Length	Mass (Da)
	A4IPA2-1 [UniParc]. Last modified May 1, 2007. Version 1. Checksum: 0AD735F0D2576F6E	FASTA	564	61,905
	10 20 30 40 50 60 MGKKYVIGID YGTESGRAVL VDLEGNEIAD HVTPYPHGVI DEVLPESNVQ LEPDWALQHP 70 80 90 100 110 120 GDYIEVLATA VPAVLQKSGV NPADVIGVGI DFTACTMLPV DASGEPLCLK PEFKHRPHSW 130 140 150 160 170 180 VKLWKHHAAQ DEANLLNEIA AKRGEAFLPR YGGKISSEWM IAKIWQILNE APDIYDQTDL 190 200 210 220 230 240 FLEATDWVIF KMTGQMVRNS CTAGYKSIWH KQDGYPSKEF FRALDPRLEH LTETKLRGPI 250 260 270 280 290 300 VPLGTRAGVL TKEMAAMMGL LPGTAVAVGN VDAHAAVPGV GVVEPGKLVM AMGTSICHML 310 320 330 340 350 360 LGTEEKYVEG MCGVVEDGII PGYFGYEAGQ SAVGDIFAWY VEQGVPAYVK EAAEKEGVSV 370 380 390 400 410 420 HEWLEKRAAA YRPGETGLLA LDWWNGNRSV LVDTDLTGLI IGYTLLTKPE EVYRALLEAT 430 440 450 460 470 480 AFGTRKIIDA FVENGVNVDE LYACGGLPQK NKLLMQIYAD VTNREIKIAA SKQTPAVGAA 490 500 510 520 530 540 MFAAVAAGKE NGGYESIVEA AQNMGKVREE TFKPIPENVA IYEQLYQEYT KLHDYFGRGE 550 560 NDVMKRLKHW KETARAAKES MTLS

References

[1]

"Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir." Feng L., Wang W., Cheng J., Ren Y., Zhao G., Gao C., Tang Y., Liu X., Han W., Peng X., Liu R., Wang L. Proc. Natl. Acad. Sci. U.S.A. 104:5602-5607(2007) [PubMed: 17372208] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CP000557 Genomic DNA. Translation: ABO67156.1.
RefSeq	YP_001125901.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	A4IPA2.
Genome annotation databases
GeneID	4966729.
GenomeReviews	Gene locus GTNG_1796 in contig CP000557_GR.
KEGG	gtn:GTNG_1796.
NMPDR	fig|420246.5.peg.1728.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	EATAYGT.
Family and domain databases
HAMAP	MF_00520. [Tree]
InterPro	IPR000577. Carb_kinase_FGGY. IPR018485. Carb_kinase_FGGY_C. IPR018484. Carb_kinase_FGGY_N. IPR005929. L_ribulokin. [Graphical view]
PANTHER	PTHR10196. FGGY_kin. 1 hit.
Pfam	PF02782. FGGY_C. 1 hit. PF00370. FGGY_N. 1 hit. [Graphical view]
TIGRFAMs	TIGR01234. L-ribulokinase. 1 hit.
ProtoNet	Search...

Entry information

Entry name

ARAB_GEOTN

Accession

Primary (citable) accession number: A4IPA2

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 15, 2008
Last sequence update:	May 1, 2007
Last modified:	November 3, 2009
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)