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Protein

Capsid protein

Gene

ORF1

Organism
Torque teno midi virus 1 (isolate MD1-073)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Self-assembles to form an icosahedral capsid with a T=1 symmetry, about 30 nm in diameter, and consisting of 60 capsid proteins. The capsid encapsulates the genomic DNA. Capsid protein is involved in attachment and entry into the host cell (By similarity).By similarity

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Gene namesi
ORF Names:ORF1
OrganismiTorque teno midi virus 1 (isolate MD1-073)
Taxonomic identifieri766184 [NCBI]
Taxonomic lineageiVirusesssDNA virusesAnelloviridaeGammatorquevirus
Virus hostiHomo sapiens (Human) [TaxID: 9606]
Proteomesi
  • UP000007078 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, T=1 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004042751 – 673Capsid proteinAdd BLAST673

Proteomic databases

PRIDEiA4GZ97

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi7 – 54Arg-richAdd BLAST48

Sequence similaritiesi

Phylogenomic databases

OrthoDBiVOG0900003O

Family and domain databases

InterProiView protein in InterPro
IPR004219 TTvirus_Unk
PfamiView protein in Pfam
PF02956 TT_ORF1, 1 hit

Sequencei

Sequence statusi: Complete.

A4GZ97-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPFWWGRRNK FWYGRNYRRK KRRFPKRRKR RFYRRTKYRR PARRRRRRRR
60 70 80 90 100
KVRRKKKTLI VRQWQPDSIV LCKIKGYDSI IWGAEGTQFQ CSTHEMYEYT
110 120 130 140 150
RQKYPGGGGF GVQLYSLEYL YDQWKLRNNI WTKTNQLKDL CRYLKCVMTF
160 170 180 190 200
YRHQHIDFVI VYERQPPFEI DKLTYMKYHP YMLLQRKHKI ILPSQTTNPR
210 220 230 240 250
GKLKKKKTIK PPKQMLSKWF FQQQFAKYDL LLIAAAACSL RYPRIGCCNE
260 270 280 290 300
NRMITLYCLN TKFYQDTEWG TTKQAPHYFK PYATINKSMI FVSNYGGKKT
310 320 330 340 350
EYNIGQWIET DIPGEGNLAR YYRSISKEGG YFSPKILQAY QTKVKSVDYK
360 370 380 390 400
PLPIVLGRYN PAIDDGKGNK IYLQTIMNGH WGLPQKTPDY IIEEVPLWLG
410 420 430 440 450
FWGYYNYLKQ TRTEAIFPLH MFVVQSKYIQ TQQTETPNNF WAFIDNSFIQ
460 470 480 490 500
GKNPWDSVIT YSEQKLWFPT VAWQLKTINA ICESGPYVPK LDNQTYSTWE
510 520 530 540 550
LATHYSFHFK WGGPQISDQP VEDPGNKNKY DVPDTIKEAL QIVNPAKNIA
560 570 580 590 600
ATMFHDWDYR RGCITSTAIK RMQQNLPTDS SLESDSDSEP APKKKRLLPV
610 620 630 640 650
LHDPQKKTEK INQCLLSLCE ESTCQEQETE ENILKLIQQQ QQQQQKLKHN
660 670
LLVLIKDLKV KQRLLQLQTG VLE
Length:673
Mass (Da):80,268
Last modified:May 1, 2007 - v1
Checksum:i128B8FC5AEF61892
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB290918 Genomic DNA Translation: BAF49427.1

Similar proteinsi

Entry informationi

Entry nameiCAPSD_TTVG1
AccessioniPrimary (citable) accession number: A4GZ97
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 8, 2011
Last sequence update: May 1, 2007
Last modified: May 23, 2018
This is version 18 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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