Reviewed, UniProtKB/Swiss-Prot A4G0G9 (DP2L_METM5)

Names and origin

Protein names

Recommended name:
    DNA polymerase II large subunit
      Short name=Pol II
    EC=2.7.7.7

Gene names

Name:	polC
Ordered Locus Names:	MmarC5_1656

Organism

Methanococcus maripaludis (strain C5 / ATCC BAA-1333) [Complete proteome] [HAMAP]

Taxonomic identifier

402880 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Methanococci › Methanococcales › Methanococcaceae › Methanococcus

Protein attributes

Sequence length	1131 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase By similarity.
Catalytic activity	Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). HAMAP MF_00324 Degradation of single-stranded DNA. It acts progressively in a 3'- to 5'-direction, releasing nucleoside 5'-phosphates. HAMAP MF_00324
Subunit structure	Heterodimer of a large subunit and a small subunit By similarity.
Sequence similarities	Belongs to the archaeal DNA polymerase II family.

Ontologies

Keywords
Biological process	DNA replication
Ligand	DNA-binding
Molecular function	DNA-directed DNA polymerase Exonuclease Hydrolase Nuclease Nucleotidyltransferase Transferase
Technical term	Complete proteome Multifunctional enzyme
Gene Ontology (GO)
Biological process	DNA catabolic process, exonucleolytic Inferred from electronic annotation. Source: HAMAP DNA-dependent DNA replication Inferred from electronic annotation. Source: HAMAP
Molecular function	3'-5' exonuclease activity Inferred from electronic annotation. Source: HAMAP DNA binding Inferred from electronic annotation. Source: HAMAP DNA-directed DNA polymerase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 1131	1131	DNA polymerase II large subunit HAMAP MF_00324		PRO_1000019389

Sequences

	Sequence		Length	Mass (Da)
	A4G0G9-1 [UniParc]. Last modified April 17, 2007. Version 1. Checksum: 7D2826B4CE998567	FASTA	1,131	128,289
	10 20 30 40 50 60 MLHVSASKGM TEYFKNILDN VKNLYDLAEG CRKSGYDVTD HVEIPLAKDM ADRVEGIVGP 70 80 90 100 110 120 KNVAERIREL VSDLGKEPAA LEIAKEIVEG KFGEFGREVG AEQAVRTALA VITEGIVAAP 130 140 150 160 170 180 LEGIAHVKIK KNNDGGEYLA IYFAGPIRSA GGTAQALAVL VGDYVRKNMG LDKFKPTDDE 190 200 210 220 230 240 VERYGEEVDL YQSEVTTFQY QPKAEEIRVA VRNISVEITG EATDDVEVSG HRDLPRIETN 250 260 270 280 290 300 QIRGGALLAL VEGVLLKAPK ILRHVDKLGI EGWDWLKELK SKKEELVEEI EEENDEFNYE 310 320 330 340 350 360 EEEDLSQYED YEVEAVTKFI GEVIAGRPVF SHPSKKGGFR LRYGRSRNTG FATDGFHPAI 370 380 390 400 410 420 MYLVDDFMAV GTQLKTERPG KATCVVPVDS IEGPIVKLND KSVLKIDTVE KAKQYRDDVE 430 440 450 460 470 480 EILFLGDILV NYGDFLENNH TILPSSWCTE WYEKILKSEN LEYTKEFIEN PDQKEVVKYA 490 500 510 520 530 540 KLTNTPLHPK YTYFWHDISK DNINVLRNWI IGGRYNESND SWGLTYDPED PEISIVKRYL 550 560 570 580 590 600 ELIGCPHTVV DEKVEIFEYY PLLYSLGYDF DEKQDVVEDI EEKLQNTKNN MHFINTIAPF 610 620 630 640 650 660 EIRRNAYIYV GARMGRPEKA ASRKMKPPVN GLFPIGNAGA LVRLINKAVD EGKTDEIEIS 670 680 690 700 710 720 NVKCSCGNVS LYRTCPFCGS SVEPSGPSRI KLPIKEYWYK ALENLKINKA GDVKCIKGMT 730 740 750 760 770 780 SKDKIIEPLE KAILRAKNDI FVFKDGTTRF DCTDVPVTHF RPVEIHGDIE KLKSLGYLKD 790 800 810 820 830 840 IHGNPLENEN QVLELNVQDV IVPESCMDYF LNVSKFIDDL LEKYYKKDRF YNVNKREELV 850 860 870 880 890 900 GHLIIGMAPH TSAGMVGRII GYSKANVGYA HPYFHASKRR NCDGDEDAFF LLLDAFMNFS 910 920 930 940 950 960 KRFLPDKRGG QMDAPLVLTT ILDPKEVDGE VHNMDSMWEY PLEFYEKSLE GIAPKEIKKI 970 980 990 1000 1010 1020 METVEDRLDK ESQYEGIGYT HETLKIDEGP LVCAYKTLGS MMEKTSAQLA VAKKIRATDE 1030 1040 1050 1060 1070 1080 RDVAEKVIQS HFVPDLIGNL RAFSRQGVRC KCGAKYRRMP LKGICRKCGS RLILTVSKGA 1090 1100 1110 1120 1130 VEKYMDVSQT MAEKYNASDY IKQRLEIIRS GIDSLFVNDK RKQVKIEDFF K

References

[1]

"Complete sequence of chromosome of Methanococcus maripaludis C5." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Detter J.C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. , Mikhailova N., Sieprawska-Lupa M., Whitman W.B., Richardson P. Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CP000609 Genomic DNA. Translation: ABO35953.1.
RefSeq	YP_001098167.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	4928217.
GenomeReviews	Gene locus MmarC5_1656 in contig CP000609_GR.
KEGG	mmq:MmarC5_1656.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	A4G0G9. NCDGDED.
Family and domain databases
HAMAP	MF_00324. [Tree]
InterPro	IPR004475. PolC_DP2. IPR016033. PolC_DP2_N. [Graphical view]
Pfam	PF03833. PolC_DP2. 1 hit. [Graphical view]
PIRSF	PIRSF016275. PolC_DP2. 1 hit.
TIGRFAMs	TIGR00354. polC. 1 hit.
ProtoNet	Search...

Entry information

Entry name

DP2L_METM5

Accession

Primary (citable) accession number: A4G0G9

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 15, 2008
Last sequence update:	April 17, 2007
Last modified:	May 5, 2009
This is version 13 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)