A4FVZ8 (A4FVZ8_METM5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
RNAse III EMBL ABO34366.1
EC=3.1.26.3 EMBL ABO34366.1

Gene names

Ordered Locus Names:

MmarC5_0049

Organism

Methanococcus maripaludis (strain C5 / ATCC BAA-1333) [Complete proteome] [HAMAP]

Taxonomic identifier

402880 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Methanococci › Methanococcales › Methanococcaceae › Methanococcus

Protein attributes

Sequence length	229 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

Ontologies

Keywords
Molecular function	Hydrolase EMBL ABO34366.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	RNA processing Inferred from electronic annotation. Source: InterPro rRNA catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular function	double-stranded RNA binding Inferred from electronic annotation. Source: InterPro ribonuclease III activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A4FVZ8 [UniParc]. Last modified April 17, 2007. Version 1. Checksum: 2C9CE632D0AEB070	FASTA	229	26,314
	10 20 30 40 50 60 MKNFEKLLSK LDIKFNDLNI FKRAFMHSSY VNEQKNTNLE DNERLEYLGD AVLELIIIEY 70 80 90 100 110 120 LFKKENLSEG EMSKLRAKYV CESALFTYAK KLNFNNYILL GKGELNSKGY NKPAIISDVF 130 140 150 160 170 180 EAFIAAIYLD QGLDSAKKFV YNNIIPIIEE SSKELFIDHK TRLQELPELN NKTIKYVKLE 190 200 210 220 EAGKPHDKKF VIAVKSGQKM LGKGIGKSKK EAEMKAAKNA LLKLEKNKN

References

[1]

"Complete sequence of chromosome of Methanococcus maripaludis C5." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Detter J.C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. , Mikhailova N., Sieprawska-Lupa M., Whitman W.B., Richardson P. Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C5 / ATCC BAA-1333.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000609 Genomic DNA. Translation: ABO34366.1.
RefSeq	YP_001096581.1. NC_009135.1.
3D structure databases
ProteinModelPortal	A4FVZ8.
ModBase	Search...
Protein-protein interaction databases
STRING	A4FVZ8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4928110.
GenomeReviews	Gene locus MmarC5_0049 in contig CP000609_GR.
KEGG	mmq:MmarC5_0049.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	arNOG12486.
HOGENOM	HBG744556.
OMA	ALTHKSF.
ProtClustDB	CLSK926361.
Family and domain databases
HAMAP	MF_00104. RNase_III. [Tree]
InterPro	IPR001159. Ds-RNA-bd. IPR014720. dsRNA-bd-like. IPR000999. RNase_III. IPR011907. RNase_III_bac. [Graphical view]
Gene3D	G3DSA:3.30.160.20. dsRNA-bd-like. 1 hit. G3DSA:1.10.1520.10. RNase_III. 1 hit.
KO	K03685.
PANTHER	PTHR11207. PTHR11207. 1 hit.
Pfam	PF00035. dsrm. 1 hit. PF00636. Ribonuclease_3. 1 hit. [Graphical view]
SMART	SM00358. DSRM. 1 hit. SM00535. RIBOc. 1 hit. [Graphical view]
SUPFAM	SSF69065. RNase_III. 1 hit.
TIGRFAMs	TIGR02191. RNaseIII. 1 hit.
PROSITE	PS50137. DS_RBD. 1 hit. PS00517. RNASE_3_1. 1 hit. PS50142. RNASE_3_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A4FVZ8_METM5

Accession

Primary (citable) accession number: A4FVZ8

Entry history

Integrated into UniProtKB/TrEMBL:	April 17, 2007
Last sequence update:	April 17, 2007
Last modified:	December 14, 2011
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)