A4FVM4 (A4FVM4_DANRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Lss protein EMBL AAI34215.1

Gene names

Name:

lss ZFIN ZDB-GENE-050119-7

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) EMBL AAI34215.1

Taxonomic identifier

7955 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Actinopterygii › Actinopteri › Neopterygii › Teleostei › Elopocephala › Clupeocephala › Otocephala › Ostariophysi › Otophysi › Cypriniphysi › Cypriniformes › Cyprinoidea › Cyprinidae › Danio

Protein attributes

Sequence length	735 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Domain	Repeat SAAS SAAS001330
Gene Ontology (GO)
Biological_process	metabolic process Inferred from electronic annotation. Source: GOC
Molecular_function	intramolecular transferase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A4FVM4 [UniParc]. Last modified April 17, 2007. Version 1. Checksum: A7038ABBA6F1E623	FASTA	735	83,667
	10 20 30 40 50 60 MTEGTCLRRR GGPYKTEPAT DLSRWRLSNV DGRQSWRYIE ETDSLDRPQS MLERHSLGLD 70 80 90 100 110 120 TSEFISASPA AHTAVEAALK GMDFYSRLQA EDGHWAGDYG GPLFLLPGLL ITCHIAKIPL 130 140 150 160 170 180 PDAWKKEMVR YLRSVQLPDG GWGLHIEDKS TVFGTALSYT TLRILGVGPD DPDMVRARNA 190 200 210 220 230 240 LHNRGGAVGI PSWGKFWLAI LNVYSWEGMN TLFPEMWLLP SWMPAHPSTL WCHCRQVYLP 250 260 270 280 290 300 MSYCYAVRLS ADEDPLVLSL RQELYVQDYS TIDWPAQRNN VATCDLYTPH SNLLTFAYFF 310 320 330 340 350 360 LNVYEAHHST ILREKAVKEL YDHIKADDRF TKCISIGPIS KTINMLVRWY VDGPTSPAFQ 370 380 390 400 410 420 KHVSRIPDYL WLGLDGMKMQ GTNGSQLWDT AFAVQAFLEA GAQDIPRFTE CLTQAHHFLD 430 440 450 460 470 480 LTQVKDNPPE YEKYYRQMNK GGFPFSTRDC GWIVADCVSE GLKSVMLLQE QCNFLKENIP 490 500 510 520 530 540 KERLFDAVNV LLSMRNPDGG FATYETKRGG KLLELLNPSE VFGDIMIDYT YVECTSAVLQ 550 560 570 580 590 600 ALKHFHSVYP EHRAEEIRST LQRGLDYCRR VQRPDGSWEG SWGVCFTYGA WFGLEAFACM 610 620 630 640 650 660 GHTFQNGSVC EEVKRACEFL LAKQMEDGGW GEDFESCEQR RYVQSSSSQI HNTCWALLGL 670 680 690 700 710 720 MAVRYPGTKV IERGIQLLID KQLPNGDWPQ ENISGVFNKS CAISYTSYRN VFPVWTLGRF 730 TRLYPCNALT GKLKL

References

[1]	NIH - Zebrafish Gene Collection (ZGC) project Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Testis EMBL AAI34215.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BC134214 mRNA. Translation: AAI34215.1.
IPI	IPI00806545.
RefSeq	NP_001077036.1. NM_001083567.1.
UniGene	Dr.82581.
3D structure databases
ProteinModelPortal	A4FVM4.
SMR	A4FVM4. Positions 6-731.
ModBase	Search...
Protein-protein interaction databases
STRING	7955.ENSDARP00000081675.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	795400.
KEGG	dre:795400.
Organism-specific databases
CTD	4047.
ZFIN	ZDB-GENE-050119-7. lss.
Phylogenomic databases
eggNOG	COG1657.
HOGENOM	HOG000234317.
HOVERGEN	HBG005604.
InParanoid	A4FVM4.
KO	K01852.
OrthoDB	EOG4SQWW4.
Family and domain databases
InterPro	IPR001330. Prenyltrans. IPR018333. Squalene_cyclase. IPR002365. Terpene_synthase_CS. IPR008930. Terpenoid_cyclase/PrenylTrfase. [Graphical view]
Pfam	PF00432. Prenyltrans. 1 hit. [Graphical view]
SUPFAM	SSF48239. Terp_cyc_toroid. 2 hits.
TIGRFAMs	TIGR01787. squalene_cyclas. 1 hit.
PROSITE	PS01074. TERPENE_SYNTHASES. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	20932221.

Entry information

Entry name

A4FVM4_DANRE

Accession

Primary (citable) accession number: A4FVM4

Entry history

Integrated into UniProtKB/TrEMBL:	April 17, 2007
Last sequence update:	April 17, 2007
Last modified:	April 3, 2013
This is version 38 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)