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Protein
Submitted name:

SNRNP200 protein

Gene

SNRNP200

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
SNRNP200 proteinImported
Gene namesi
Name:SNRNP200Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

PTM / Processingi

Proteomic databases

EPDiA4FU77.
PaxDbiA4FU77.
PeptideAtlasiA4FU77.
PRIDEiA4FU77.

Expressioni

Gene expression databases

BgeeiA4FU77.

Interactioni

Protein-protein interaction databases

IntActiA4FU77. 2 interactions.
MINTiMINT-4654800.
STRINGi9606.ENSP00000317123.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini241 – 424184Helicase ATP-bindingInterPro annotationAdd
BLAST
Domaini435 – 672238Helicase C-terminalInterPro annotationAdd
BLAST
Domaini1088 – 1263176Helicase ATP-bindingInterPro annotationAdd
BLAST
Domaini1296 – 1504209Helicase C-terminalInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG0952. Eukaryota.
COG1204. LUCA.
HOVERGENiHBG051896.

Family and domain databases

Gene3Di2.60.40.150. 1 hit.
3.40.50.300. 4 hits.
InterProiIPR000008. C2_dom.
IPR011545. DEAD/DEAH_box_helicase_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR014756. Ig_E-set.
IPR027417. P-loop_NTPase.
IPR004179. Sec63-dom.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00270. DEAD. 2 hits.
PF00271. Helicase_C. 1 hit.
PF02889. Sec63. 2 hits.
[Graphical view]
SMARTiSM00487. DEXDc. 2 hits.
SM00490. HELICc. 2 hits.
SM00973. Sec63. 2 hits.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 2 hits.
SSF52540. SSF52540. 4 hits.
SSF81296. SSF81296. 1 hit.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 2 hits.
PS51194. HELICASE_CTER. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

A4FU77-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
LMSSKKKDLH PRDIDAFWLQ RQLSRFYDDA IVSQKKADEV LEILKTASDD
60 70 80 90 100
RECENQLVLL LGFNTFDFIK VLRQHRMMIL YCTLLASAQS EAEKERIMGK
110 120 130 140 150
MEADPELSKF LYQLHETEKE DLIREERSRR ERVRQSRMDT DLETMDLDQG
160 170 180 190 200
GEALAPRQVL DLEDLVFTQG SHFMANKRCQ LPDGSFRRQR KGYEEVHVPA
210 220 230 240 250
LKPKPFGSEE QLLPVEKLPK YAQAGFEGFK TLNRIQSKLY RAALETDENL
260 270 280 290 300
LLCAPTGAGK TNVALMCMLR EIGKHINMDG TINVDDFKII YIAPMRSLVQ
310 320 330 340 350
EMVGSFGKRL ATYGITVAEL TGDHQLCKEE ISATQIIVCT PEKWDIITRK
360 370 380 390 400
GGERTYTQLV RLIILDEIHL LHDDRGPVLE ALVARAIRNI EMTQEDVRLI
410 420 430 440 450
GLSATLPNYE DVATFLRVDP AKGLFYFDNS FRPVPLEQTY VGITEKKAIK
460 470 480 490 500
RFQIMNEIVY EKIMEHAGKN QVLVFVHSRK ETGKTARAIR DMCLEKDTLG
510 520 530 540 550
LFLREGSAST EVLRTEAEQC KNLELKDLLP YGFAIHHAGM TRVDRTLVED
560 570 580 590 600
LFADKHIQVL VSTATLAWGV NLPAHTVIIK GTQVYSPEKG RWTELGALDI
610 620 630 640 650
LQMLGRAGRP QYDTKGEGIL ITSHGELQYY LSLLNQQLPI ESQMVSKLPD
660 670 680 690 700
MLNAEIVLGN VQNAKDAVNW LGYAYLYIRM LRSPTLYGIS HDDLKGDPLL
710 720 730 740 750
DQRRLDLVHT AALMLDKNNL VKYDKKTGNF QVTELGRIAS HYYITNDTVQ
760 770 780 790 800
TYNQLLKPTL SEIELFRVFS LSSEFKNITV REEEKLELQK LLERVPIPVK
810 820 830 840 850
ESIEEPSAKI NVLLQAFISQ LKLEGFALMA DMVYVTQSAG RLMRAIFEIV
860 870 880 890 900
LNRGWAQLTD KTLNLCKMID KRMWQSMCPL RQFRKLPEEV VKKIEKKNFP
910 920 930 940 950
FERLYDLNHN EIGELIRMPK MGKTIHKYVH LFPKLELSVH LQPITRSTLK
960 970 980 990 1000
VELTITPDFQ WDEKVHGSSE AFWILVEDVD SEVILHHEYF LLKAKYAQDE
1010 1020 1030 1040 1050
HLITFFVPVF EPLPPQYFIR VVSDRWLSCE TQLPVSFRHL ILPEKYPPPT
1060 1070 1080 1090 1100
ELLDLQPLPV SALRNSAFES LYQDKFPFFN PIQTQVFNTV YNSDDNVFVG
1110 1120 1130 1140 1150
APTGSGKTIC AEFAILRMLL QSSEGRCVYI TPMEALAEQV YMDWYEKFQD
1160 1170 1180 1190 1200
RLNKKVVLLT GETSTDLKLL GKGNIIISTP EKWDILSRRW KQRKNVQNIN
1210 1220 1230 1240 1250
LFVVDEVHLI GGENGPVLEV ICSRMRYISS QIERPIRIVA LSSSLSNAKD
1260 1270 1280 1290 1300
VAHWLGCSAT STFNFHPNVR PVPLELHIQG FNISHTQTRL LSMAKPVYHA
1310 1320 1330 1340 1350
ITKHSPKKPV IVFVPSRKQT RLTAIDILTT CAADIQRQRF LHCTEKDLIP
1360 1370 1380 1390 1400
YLEKLSDSTL KETLLNGVGY LHEGLSPMER RLVEQLFSSG AIQVVVASRS
1410 1420 1430 1440 1450
LCWGMNVAAH LVIIMDTQYY NGKIHAYVDY PIYDVLQMVG HANRPLQDDE
1460 1470 1480 1490 1500
GRCVIMCQGS KKDFFKKFLY EPLPVESHLD HCMHDHFNAE IVTKTIENKQ
1510 1520 1530 1540 1550
DAVDYLTWTF LYRRMTQNPN YYNLQGISHR HLSDHLSELV EQTLSDLEQS
1560 1570 1580 1590 1600
KCISIEDEMD VAPLNLGMIA AYYYINYTTI ELFSMSLNAK TKVRGLIEII
1610 1620 1630 1640 1650
SNAAEYENIP IRHHEDNLLR QLAQKVPHKL NNPKFNDPHV KTNLLLQAHL
1660 1670 1680 1690 1700
SRMQLSAELQ SDTEEILSKA IRLIQACVDV LSSNGWLSPA LAAMELAQMV
1710 1720 1730 1740 1750
TQAMWSKDSY LKQLPHFTSE HIKRCTDKGV ESVFDIMEME DEERNALLQL
1760 1770 1780 1790 1800
TDSQIADVAR FCNRYPNIEL SYEVVDKDSI RSGGPVVVLV QLEREEEVTG
1810 1820 1830 1840 1850
PVIAPLFPQK REEGWWVVIG DAKSNSLISI KRLTLQQKAK VKLDFVAPAT
1860 1870 1880
GAHNYTLYFM SDAYMGCDQE YKFSVDVKEA ETDSDSD
Length:1,887
Mass (Da):216,183
Last modified:April 17, 2007 - v1
Checksum:iCC0BF62535DA3894
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC112891 mRNA. Translation: AAI12892.1.
UniGeneiHs.246112.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC112891 mRNA. Translation: AAI12892.1.
UniGeneiHs.246112.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiA4FU77. 2 interactions.
MINTiMINT-4654800.
STRINGi9606.ENSP00000317123.

Proteomic databases

EPDiA4FU77.
PaxDbiA4FU77.
PeptideAtlasiA4FU77.
PRIDEiA4FU77.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiKOG0952. Eukaryota.
COG1204. LUCA.
HOVERGENiHBG051896.

Miscellaneous databases

ChiTaRSiSNRNP200. human.

Gene expression databases

BgeeiA4FU77.

Family and domain databases

Gene3Di2.60.40.150. 1 hit.
3.40.50.300. 4 hits.
InterProiIPR000008. C2_dom.
IPR011545. DEAD/DEAH_box_helicase_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR014756. Ig_E-set.
IPR027417. P-loop_NTPase.
IPR004179. Sec63-dom.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00270. DEAD. 2 hits.
PF00271. Helicase_C. 1 hit.
PF02889. Sec63. 2 hits.
[Graphical view]
SMARTiSM00487. DEXDc. 2 hits.
SM00490. HELICc. 2 hits.
SM00973. Sec63. 2 hits.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 2 hits.
SSF52540. SSF52540. 4 hits.
SSF81296. SSF81296. 1 hit.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 2 hits.
PS51194. HELICASE_CTER. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: TestisImported.

Entry informationi

Entry nameiA4FU77_HUMAN
AccessioniPrimary (citable) accession number: A4FU77
Entry historyi
Integrated into UniProtKB/TrEMBL: April 17, 2007
Last sequence update: April 17, 2007
Last modified: July 6, 2016
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.