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Protein

EF-hand calcium-binding domain-containing protein 5

Gene

EFCAB5

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Calcium bindingi882 – 89312PROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  1. calcium ion binding Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Calcium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
EF-hand calcium-binding domain-containing protein 5
Gene namesi
Name:EFCAB5
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 17

Organism-specific databases

HGNCiHGNC:24801. EFCAB5.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA145008457.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 15031503EF-hand calcium-binding domain-containing protein 5PRO_0000315836Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei77 – 771Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiA4FU69.
PaxDbiA4FU69.
PRIDEiA4FU69.

PTM databases

PhosphoSiteiA4FU69.

Expressioni

Gene expression databases

BgeeiA4FU69.
CleanExiHS_EFCAB5.
ExpressionAtlasiA4FU69. baseline and differential.
GenevestigatoriA4FU69.

Organism-specific databases

HPAiHPA022852.
HPA028608.

Interactioni

Protein-protein interaction databases

BioGridi131921. 1 interaction.
STRINGi9606.ENSP00000378312.

Structurei

3D structure databases

ProteinModelPortaliA4FU69.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini869 – 90436EF-handPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 EF-hand domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiNOG41426.
GeneTreeiENSGT00390000009150.
HOGENOMiHOG000112338.
HOVERGENiHBG107836.
InParanoidiA4FU69.
OMAiHIQFPKP.
OrthoDBiEOG7SR4M5.
PhylomeDBiA4FU69.
TreeFamiTF329659.

Family and domain databases

Gene3Di1.10.238.10. 1 hit.
InterProiIPR011992. EF-hand-dom_pair.
IPR018247. EF_Hand_1_Ca_BS.
IPR002048. EF_hand_dom.
IPR003018. GAF.
IPR029016. GAF_dom_like.
[Graphical view]
SMARTiSM00065. GAF. 1 hit.
[Graphical view]
SUPFAMiSSF55781. SSF55781. 1 hit.
PROSITEiPS00018. EF_HAND_1. 1 hit.
PS50222. EF_HAND_2. 1 hit.
[Graphical view]

Sequences (6)i

Sequence statusi: Complete.

This entry describes 6 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: A4FU69-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MNESASQEEL RPAQENRKED KERKWNLTEV KELHETLQSV PDVPVKEDTN
60 70 80 90 100
SVVEKAMDEI KSQELNLEGQ RKISPGSIKD SKTEASGNIA IRKSAKVIFA
110 120 130 140 150
LDETELKSKP EHTWKKNLFE RMEARAQAMQ QKIIDKENLK KELEKKAEKK
160 170 180 190 200
LPRDNLAKEW FNTDSMTLNN TAYLLDKLLP TLVPGVENML TQVEKKKVLT
210 220 230 240 250
EADTPSKFDP INYLGEYLIR NNPNYIKDPG MSGYQRLMKE VTEDLKIYVP
260 270 280 290 300
DTICNRVSKM KENVKQNRKQ RESIDKIIVK VANTRKQALQ EQFDEWILDP
310 320 330 340 350
KGMIPKSVIQ NVLQEFFQNP DFKLGSHCKQ LDITDSTEPR LNKMEFTEYI
360 370 380 390 400
SSHIKDLKSE MFEELLKHLC HSADEFREVI KADMRRQMFA ELFLHCDHGK
410 420 430 440 450
VGFLDRQRTL ALLELFYDHS SQMLRSLLRN PRQWPFIEFE EINLTELWGD
460 470 480 490 500
MDNQKHIYEG FDKVLLEMNT LLSANHASKT QSKLLESPDQ PKLNEQRTST
510 520 530 540 550
PSPNPPEQQR GVTAEQGPQR ISIEEQQQGK KPTAEQELYI ESVIEPGTHT
560 570 580 590 600
ESTLEQGSSR RLLTEQETHR ESTTEQGQHK GSIEGQGPRR VSVSEQGSSR
610 620 630 640 650
ESVAEQGSRR ESIAEQDRHK GSVAEQGSRR MSAAEQGSLR ESVIEEPYQK
660 670 680 690 700
SEQGPYGEII SEEQEDIGST SQSRKDSILK STKYGEPITS EYIEVPLQEK
710 720 730 740 750
RSWEQTYEEE IFLSSELQEE VPTLSRKDHF PETTKKEVQK DKPCEPKSQK
760 770 780 790 800
IEGKSWSGEF FTCNWKMKYV TFEDEEQANL IYGNSRFTDL HSIIRNIQSC
810 820 830 840 850
KEVKGRTAFN GVSFNLLQFV QLLETFVGED APLSVSETLT SFFKEGYVET
860 870 880 890 900
EQEKMNALEQ FSQNAFQVRQ RLLLEAIFQK WDSDGSGFLD LKEVDELLYT
910 920 930 940 950
YKEGMEKESM KKAKLHIQFP KPHPGHEVRL SSKQFQNYIE LVVSELRGNE
960 970 980 990 1000
DQVLESVVEF LMNALERSHI ESLRNSARRK WLHQIQCAAE TSGVSLEPVY
1010 1020 1030 1040 1050
SETFKALMQD AEAHGNKKIS AHISLLEENL LLPEKGNVLL RNVACTLDDA
1060 1070 1080 1090 1100
QFVLNRVLYR DMKGISFTVV DEGKPIHVPQ VQYHGNIFFW NQSRNKHDYN
1110 1120 1130 1140 1150
GSFLALPLQD AYMRIFGVLA VDTLRDPHEI NIFLPHEIRF YQGVANVFST
1160 1170 1180 1190 1200
AYHYVHSREH ILHIVITGIG WLYDVTSSIT SITTYFVEPS PAQDSDYVLR
1210 1220 1230 1240 1250
NMMVTGQLGL TEIHKNPPTI HRKSCIFRDF LFKCTDSSEV VLASACGETH
1260 1270 1280 1290 1300
IVVPLRERTG EALGVLDFNI GQNRMLLCQE YKDLQKMMKV VQVACYEILG
1310 1320 1330 1340 1350
EFSGEIKKKY ILEIENVREV QRAGILFFRI MLLELQESIQ LLNSMEFVSL
1360 1370 1380 1390 1400
LLYDHTLVTE PNSPQDSKSM ELEANVKLVR DILKAVILFF HPELEFSSDF
1410 1420 1430 1440 1450
GSWDKCKFYV NKYLVNNICA FDPTAKHVEV NVQLIDEYIR DHSRTEVWKF
1460 1470 1480 1490 1500
GNVVIEHLYH WIHICSALMK ITKQLNSGIT PPLPSKTDNY MYAKMPGEGL

QEK
Length:1,503
Mass (Da):173,404
Last modified:October 31, 2012 - v3
Checksum:i907EED07E7C17EB7
GO
Isoform 2 (identifier: A4FU69-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     913-926: AKLHIQFPKPHPGH → GLTLSPGWSAVAQL
     927-1503: Missing.

Show »
Length:926
Mass (Da):106,855
Checksum:iD0DEE537B4107202
GO
Isoform 3 (identifier: A4FU69-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     789-912: Missing.

Show »
Length:1,379
Mass (Da):159,092
Checksum:i850C9B1375349299
GO
Isoform 4 (identifier: A4FU69-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     913-1440: Missing.

Show »
Length:975
Mass (Da):112,739
Checksum:iB5845D5FA67F2A4D
GO
Isoform 5 (identifier: A4FU69-5) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-56: Missing.
     861-912: FSQNAFQVRQ...EGMEKESMKK → VSLCRQAGVQ...KFFPLETKFP
     913-1503: Missing.

Note: No experimental confirmation available.

Show »
Length:856
Mass (Da):98,992
Checksum:i5D6CC2569FB167D7
GO
Isoform 6 (identifier: A4FU69-6) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-343: Missing.
     861-912: FSQNAFQVRQ...EGMEKESMKK → VSLCRQAGVQ...KFFPLETKFP
     913-1503: Missing.

Note: No experimental confirmation available.

Show »
Length:569
Mass (Da):65,755
Checksum:i01E296A46B3AA225
GO

Sequence cautioni

The sequence BAC87284.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti324 – 3241L → P in BX648689 (PubMed:14702039).Curated
Sequence conflicti374 – 3741D → E in BX648689 (PubMed:14702039).Curated
Sequence conflicti429 – 4291R → Q in BAC87284 (PubMed:15489334).Curated
Sequence conflicti962 – 9621M → I in BAC87284 (PubMed:15489334).Curated
Sequence conflicti1386 – 13861V → G in CAD38767 (PubMed:14702039).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti237 – 2371L → V.1 Publication
Corresponds to variant rs9897794 [ dbSNP | Ensembl ].
VAR_038343
Natural varianti278 – 2781I → K.3 Publications
Corresponds to variant rs4795524 [ dbSNP | Ensembl ].
VAR_038344
Natural varianti561 – 5611R → S.
Corresponds to variant rs9900546 [ dbSNP | Ensembl ].
VAR_038345
Natural varianti1145 – 11451A → D.
Corresponds to variant rs9894896 [ dbSNP | Ensembl ].
VAR_048644
Natural varianti1252 – 12521V → A.
Corresponds to variant rs4499292 [ dbSNP | Ensembl ].
VAR_048645
Natural varianti1274 – 12741R → T.
Corresponds to variant rs35724168 [ dbSNP | Ensembl ].
VAR_048646
Natural varianti1488 – 14881D → Y.
Corresponds to variant rs5024269 [ dbSNP | Ensembl ].
VAR_048647

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 343343Missing in isoform 6. 1 PublicationVSP_055510Add
BLAST
Alternative sequencei1 – 5656Missing in isoform 5. 1 PublicationVSP_047184Add
BLAST
Alternative sequencei789 – 912124Missing in isoform 3. 1 PublicationVSP_030732Add
BLAST
Alternative sequencei861 – 91252FSQNA…ESMKK → VSLCRQAGVQWRNCSSLQPP TPGLKRSSHHRLLSNWDYRE RRKFFPLETKFP in isoform 5 and isoform 6. 1 PublicationVSP_047185Add
BLAST
Alternative sequencei913 – 1503591Missing in isoform 5 and isoform 6. 1 PublicationVSP_047186Add
BLAST
Alternative sequencei913 – 1440528Missing in isoform 4. 1 PublicationVSP_030733Add
BLAST
Alternative sequencei913 – 92614AKLHI…PHPGH → GLTLSPGWSAVAQL in isoform 2. 1 PublicationVSP_030734Add
BLAST
Alternative sequencei927 – 1503577Missing in isoform 2. 1 PublicationVSP_030735Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK128126 mRNA. Translation: BAC87284.1. Different initiation.
AK299608 mRNA. Translation: BAG61537.1.
AK303060 mRNA. Translation: BAG64177.1.
BX648689 mRNA. No translation available.
AL833911 mRNA. Translation: CAD38767.1.
AC104982 Genomic DNA. No translation available.
AC104984 Genomic DNA. No translation available.
AC104996 Genomic DNA. No translation available.
BC110608 mRNA. Translation: AAI10609.1.
BC110609 mRNA. Translation: AAI10610.1.
BC119807 mRNA. Translation: AAI19808.1.
BC137519 mRNA. Translation: AAI37520.1.
CCDSiCCDS11254.2. [A4FU69-1]
CCDS54103.1. [A4FU69-5]
RefSeqiNP_001138525.1. NM_001145053.1.
NP_940931.2. NM_198529.3.
XP_006721942.1. XM_006721879.1. [A4FU69-1]
UniGeneiHs.662411.

Genome annotation databases

EnsembliENST00000394835; ENSP00000378312; ENSG00000176927. [A4FU69-1]
ENST00000440741; ENSP00000393095; ENSG00000176927. [A4FU69-2]
ENST00000536908; ENSP00000440619; ENSG00000176927. [A4FU69-5]
GeneIDi374786.
KEGGihsa:374786.
UCSCiuc002het.3. human. [A4FU69-1]
uc010cse.3. human. [A4FU69-3]
uc010csf.3. human. [A4FU69-4]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK128126 mRNA. Translation: BAC87284.1. Different initiation.
AK299608 mRNA. Translation: BAG61537.1.
AK303060 mRNA. Translation: BAG64177.1.
BX648689 mRNA. No translation available.
AL833911 mRNA. Translation: CAD38767.1.
AC104982 Genomic DNA. No translation available.
AC104984 Genomic DNA. No translation available.
AC104996 Genomic DNA. No translation available.
BC110608 mRNA. Translation: AAI10609.1.
BC110609 mRNA. Translation: AAI10610.1.
BC119807 mRNA. Translation: AAI19808.1.
BC137519 mRNA. Translation: AAI37520.1.
CCDSiCCDS11254.2. [A4FU69-1]
CCDS54103.1. [A4FU69-5]
RefSeqiNP_001138525.1. NM_001145053.1.
NP_940931.2. NM_198529.3.
XP_006721942.1. XM_006721879.1. [A4FU69-1]
UniGeneiHs.662411.

3D structure databases

ProteinModelPortaliA4FU69.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi131921. 1 interaction.
STRINGi9606.ENSP00000378312.

PTM databases

PhosphoSiteiA4FU69.

Proteomic databases

MaxQBiA4FU69.
PaxDbiA4FU69.
PRIDEiA4FU69.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000394835; ENSP00000378312; ENSG00000176927. [A4FU69-1]
ENST00000440741; ENSP00000393095; ENSG00000176927. [A4FU69-2]
ENST00000536908; ENSP00000440619; ENSG00000176927. [A4FU69-5]
GeneIDi374786.
KEGGihsa:374786.
UCSCiuc002het.3. human. [A4FU69-1]
uc010cse.3. human. [A4FU69-3]
uc010csf.3. human. [A4FU69-4]

Organism-specific databases

CTDi374786.
GeneCardsiGC17P028256.
H-InvDBHIX0013680.
HGNCiHGNC:24801. EFCAB5.
HPAiHPA022852.
HPA028608.
neXtProtiNX_A4FU69.
PharmGKBiPA145008457.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG41426.
GeneTreeiENSGT00390000009150.
HOGENOMiHOG000112338.
HOVERGENiHBG107836.
InParanoidiA4FU69.
OMAiHIQFPKP.
OrthoDBiEOG7SR4M5.
PhylomeDBiA4FU69.
TreeFamiTF329659.

Miscellaneous databases

GenomeRNAii374786.
NextBioi100259.
PROiA4FU69.

Gene expression databases

BgeeiA4FU69.
CleanExiHS_EFCAB5.
ExpressionAtlasiA4FU69. baseline and differential.
GenevestigatoriA4FU69.

Family and domain databases

Gene3Di1.10.238.10. 1 hit.
InterProiIPR011992. EF-hand-dom_pair.
IPR018247. EF_Hand_1_Ca_BS.
IPR002048. EF_hand_dom.
IPR003018. GAF.
IPR029016. GAF_dom_like.
[Graphical view]
SMARTiSM00065. GAF. 1 hit.
[Graphical view]
SUPFAMiSSF55781. SSF55781. 1 hit.
PROSITEiPS00018. EF_HAND_1. 1 hit.
PS50222. EF_HAND_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 5 AND 6), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 195-1503 (ISOFORM 3), VARIANTS VAL-237 AND LYS-278.
    Tissue: Brain and Testis.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), VARIANT LYS-278.
  3. "DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage."
    Zody M.C., Garber M., Adams D.J., Sharpe T., Harrow J., Lupski J.R., Nicholson C., Searle S.M., Wilming L., Young S.K., Abouelleil A., Allen N.R., Bi W., Bloom T., Borowsky M.L., Bugalter B.E., Butler J., Chang J.L.
    , Chen C.-K., Cook A., Corum B., Cuomo C.A., de Jong P.J., DeCaprio D., Dewar K., FitzGerald M., Gilbert J., Gibson R., Gnerre S., Goldstein S., Grafham D.V., Grocock R., Hafez N., Hagopian D.S., Hart E., Norman C.H., Humphray S., Jaffe D.B., Jones M., Kamal M., Khodiyar V.K., LaButti K., Laird G., Lehoczky J., Liu X., Lokyitsang T., Loveland J., Lui A., Macdonald P., Major J.E., Matthews L., Mauceli E., McCarroll S.A., Mihalev A.H., Mudge J., Nguyen C., Nicol R., O'Leary S.B., Osoegawa K., Schwartz D.C., Shaw-Smith C., Stankiewicz P., Steward C., Swarbreck D., Venkataraman V., Whittaker C.A., Yang X., Zimmer A.R., Bradley A., Hubbard T., Birren B.W., Rogers J., Lander E.S., Nusbaum C.
    Nature 440:1045-1049(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 203-1503 (ISOFORM 4), VARIANT LYS-278.
  5. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-77, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Cervix carcinoma.

Entry informationi

Entry nameiEFCB5_HUMAN
AccessioniPrimary (citable) accession number: A4FU69
Secondary accession number(s): B2RPN0
, B4DS75, B4DZR5, F5GYL2, Q0VD68, Q6ZRM6, Q8NDG9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: October 31, 2012
Last modified: January 7, 2015
This is version 66 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 17
    Human chromosome 17: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.