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A4FPJ3

- RS4_SACEN

UniProt

A4FPJ3 - RS4_SACEN

Protein

30S ribosomal protein S4

Gene

rpsD

Organism
Saccharopolyspora erythraea (strain NRRL 23338)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 44 (01 Oct 2014)
      Sequence version 1 (17 Apr 2007)
      Previous versions | rss
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    Functioni

    One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.UniRule annotation
    With S5 and S12 plays an important role in translational accuracy.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S4UniRule annotation
    Gene namesi
    Name:rpsDUniRule annotation
    Ordered Locus Names:SACE_6804
    OrganismiSaccharopolyspora erythraea (strain NRRL 23338)
    Taxonomic identifieri405948 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeSaccharopolyspora
    ProteomesiUP000006728: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. small ribosomal subunit Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 20120130S ribosomal protein S4PRO_0000293360Add
    BLAST

    Proteomic databases

    PRIDEiA4FPJ3.

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.UniRule annotation

    Protein-protein interaction databases

    STRINGi405948.SACE_6804.

    Structurei

    3D structure databases

    ProteinModelPortaliA4FPJ3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini91 – 15767S4 RNA-bindingUniRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the ribosomal protein S4P family.UniRule annotation
    Contains 1 S4 RNA-binding domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0522.
    HOGENOMiHOG000221004.
    KOiK02986.
    OMAiTCKLSRR.
    OrthoDBiEOG6N3CXM.

    Family and domain databases

    Gene3Di1.10.1050.10. 1 hit.
    3.10.290.10. 1 hit.
    HAMAPiMF_01306_B. Ribosomal_S4_B.
    InterProiIPR022801. Ribosomal_S4/S9.
    IPR001912. Ribosomal_S4/S9_N.
    IPR005709. Ribosomal_S4_bac-type.
    IPR018079. Ribosomal_S4_CS.
    IPR002942. S4_RNA-bd.
    [Graphical view]
    PANTHERiPTHR11831. PTHR11831. 1 hit.
    PfamiPF00163. Ribosomal_S4. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view]
    SMARTiSM00363. S4. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR01017. rpsD_bact. 1 hit.
    PROSITEiPS00632. RIBOSOMAL_S4. 1 hit.
    PS50889. S4. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A4FPJ3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MARYTGPATR KSRRLKVDLV GGDQAFERRP YPPGQHGRAR IKETEYLLQL    50
    QEKQKAKFTY GVLERQFRSY YEEANRRPGK TGDNLLQVLE CRLDNVVYRA 100
    GLARTRRMAR QLVSHGHFTV NGKKVNIPSY QVSKWDIIDV KQKSLGTTPF 150
    IIAKETIGER PVPAWLQVVP SNLRILVHQR PERAQIDTPV TEQLIVELYS 200
    K 201
    Length:201
    Mass (Da):23,226
    Last modified:April 17, 2007 - v1
    Checksum:iB71671D6F613096B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM420293 Genomic DNA. Translation: CAM05968.1.
    RefSeqiYP_001108893.1. NC_009142.1.

    Genome annotation databases

    EnsemblBacteriaiCAM05968; CAM05968; SACE_6804.
    GeneIDi4946533.
    KEGGisen:SACE_6804.
    PATRICi23421050. VBISacEry28377_6807.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM420293 Genomic DNA. Translation: CAM05968.1 .
    RefSeqi YP_001108893.1. NC_009142.1.

    3D structure databases

    ProteinModelPortali A4FPJ3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 405948.SACE_6804.

    Proteomic databases

    PRIDEi A4FPJ3.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAM05968 ; CAM05968 ; SACE_6804 .
    GeneIDi 4946533.
    KEGGi sen:SACE_6804.
    PATRICi 23421050. VBISacEry28377_6807.

    Phylogenomic databases

    eggNOGi COG0522.
    HOGENOMi HOG000221004.
    KOi K02986.
    OMAi TCKLSRR.
    OrthoDBi EOG6N3CXM.

    Family and domain databases

    Gene3Di 1.10.1050.10. 1 hit.
    3.10.290.10. 1 hit.
    HAMAPi MF_01306_B. Ribosomal_S4_B.
    InterProi IPR022801. Ribosomal_S4/S9.
    IPR001912. Ribosomal_S4/S9_N.
    IPR005709. Ribosomal_S4_bac-type.
    IPR018079. Ribosomal_S4_CS.
    IPR002942. S4_RNA-bd.
    [Graphical view ]
    PANTHERi PTHR11831. PTHR11831. 1 hit.
    Pfami PF00163. Ribosomal_S4. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view ]
    SMARTi SM00363. S4. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR01017. rpsD_bact. 1 hit.
    PROSITEi PS00632. RIBOSOMAL_S4. 1 hit.
    PS50889. S4. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the erythromycin-producing bacterium Saccharopolyspora erythraea NRRL23338."
      Oliynyk M., Samborskyy M., Lester J.B., Mironenko T., Scott N., Dickens S., Haydock S.F., Leadlay P.F.
      Nat. Biotechnol. 25:447-453(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NRRL 23338.

    Entry informationi

    Entry nameiRS4_SACEN
    AccessioniPrimary (citable) accession number: A4FPJ3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 10, 2007
    Last sequence update: April 17, 2007
    Last modified: October 1, 2014
    This is version 44 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3