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Protein
Submitted name:

Diguanylate cyclase (GGDEF domain)

Gene

SACE_3289

Organism
Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Diguanylate cyclase (GGDEF domain)Imported
Gene namesi
Ordered Locus Names:SACE_3289Imported
OrganismiSaccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)Imported
Taxonomic identifieri405948 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaPseudonocardialesPseudonocardiaceaeSaccharopolyspora
Proteomesi
  • UP000006728 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei12 – 31HelicalSequence analysisAdd BLAST20
Transmembranei37 – 60HelicalSequence analysisAdd BLAST24
Transmembranei72 – 94HelicalSequence analysisAdd BLAST23
Transmembranei106 – 123HelicalSequence analysisAdd BLAST18
Transmembranei135 – 153HelicalSequence analysisAdd BLAST19
Transmembranei165 – 185HelicalSequence analysisAdd BLAST21
Transmembranei197 – 217HelicalSequence analysisAdd BLAST21
Transmembranei232 – 253HelicalSequence analysisAdd BLAST22
Transmembranei265 – 285HelicalSequence analysisAdd BLAST21
Transmembranei297 – 315HelicalSequence analysisAdd BLAST19

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi405948.SeryN2_010100016583.

Structurei

3D structure databases

ProteinModelPortaliA4FET9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini354 – 488GGDEFInterPro annotationAdd BLAST135

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105BZU. Bacteria.
COG2199. LUCA.
COG2206. LUCA.
OMAiTGLHTRR.
OrthoDBiPOG091H09F9.

Family and domain databases

CDDicd01949. GGDEF. 1 hit.
Gene3Di1.10.3210.10. 1 hit.
InterProiIPR000160. GGDEF_dom.
IPR006674. HD_domain.
IPR029787. Nucleotide_cyclase.
[Graphical view]
PfamiPF00990. GGDEF. 1 hit.
[Graphical view]
SMARTiSM00267. GGDEF. 1 hit.
[Graphical view]
SUPFAMiSSF55073. SSF55073. 1 hit.
TIGRFAMsiTIGR00254. GGDEF. 1 hit.
PROSITEiPS50887. GGDEF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4FET9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKTPRQRPG DRAWLYYVMG GSATTLVYYA VPAEGDWLVV RIVLYCLISA
60 70 80 90 100
SAVPAIAVGL ARYRPVPRLP WLIIGASQLV YAVADASFYT AHYIFEVTTF
110 120 130 140 150
PFVADIFYIA HYPAVVAGLL LLIERRSPRR DVPNLLDASL LAVVAAMLSW
160 170 180 190 200
LFLIEPRVRT DSPPLVTAAS LAYPVLDLAL FAVALRLMLG SGRRPTSFFL
210 220 230 240 250
LAYNLLAFMA ADSIYVLQQL GGTYGAGNFL DAIWLSGNIA LGAAGLHPSM
260 270 280 290 300
AVLGEPGPAK EQSLGPSRIA ALTAAALVAP TMLLVQHGRG AFHDIPVIAA
310 320 330 340 350
ACAVLFLLTI ARLVVMVVEQ RRLAVTDVLT GLCTRRYFEA HLPQAMARCE
360 370 380 390 400
RAGRPLAVFI IDIDHFKSIN DRYGHPVGDR VLVETATRLR RAVREGDVLA
410 420 430 440 450
RYGGEEFALL ALDVDRAAVT GMAERLRAAV GGMPVELSTA DRAWVTVSVG
460 470 480 490 500
AAGGDGVGRS PQQLIADADR ALYAAKAMGR DRVALGDELE HAPAVDRAAA
510 520 530 540 550
LQYLHAVAER VDRLLSNQPH GRPVGRWARL VCQRLGAAEA TCADAELAGR
560 570 580 590 600
LHDIGKIVLP ESILAKPTAL SEAEWALMRQ HPDHGYRLIR AVAGMGEIAE
610 620 630 640 650
IVREHHERLD GTGYPRGLAG TEIRFEARVI AVCDAWATMR SDRPYQSPLN
660 670 680 690
TEEALRQLRD GSGGQFDPQV VDAFVELVEQ GRIDELTTGS GRPLRA
Length:696
Mass (Da):75,338
Last modified:April 17, 2007 - v1
Checksum:iD960C4D26508D3D0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM420293 Genomic DNA. Translation: CAM02564.1.
RefSeqiWP_011873988.1. NC_009142.1.

Genome annotation databases

EnsemblBacteriaiCAM02564; CAM02564; SACE_3289.
KEGGisen:SACE_3289.
PATRICi23413994. VBISacEry28377_3292.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM420293 Genomic DNA. Translation: CAM02564.1.
RefSeqiWP_011873988.1. NC_009142.1.

3D structure databases

ProteinModelPortaliA4FET9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi405948.SeryN2_010100016583.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAM02564; CAM02564; SACE_3289.
KEGGisen:SACE_3289.
PATRICi23413994. VBISacEry28377_3292.

Phylogenomic databases

eggNOGiENOG4105BZU. Bacteria.
COG2199. LUCA.
COG2206. LUCA.
OMAiTGLHTRR.
OrthoDBiPOG091H09F9.

Family and domain databases

CDDicd01949. GGDEF. 1 hit.
Gene3Di1.10.3210.10. 1 hit.
InterProiIPR000160. GGDEF_dom.
IPR006674. HD_domain.
IPR029787. Nucleotide_cyclase.
[Graphical view]
PfamiPF00990. GGDEF. 1 hit.
[Graphical view]
SMARTiSM00267. GGDEF. 1 hit.
[Graphical view]
SUPFAMiSSF55073. SSF55073. 1 hit.
TIGRFAMsiTIGR00254. GGDEF. 1 hit.
PROSITEiPS50887. GGDEF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiA4FET9_SACEN
AccessioniPrimary (citable) accession number: A4FET9
Entry historyi
Integrated into UniProtKB/TrEMBL: April 17, 2007
Last sequence update: April 17, 2007
Last modified: November 30, 2016
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.