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Protein
Submitted name:

Pentatricopeptide repeat domain 1

Gene

PTCD1

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Pentatricopeptide repeat domain 1Imported
Submitted name:
cDNA FLJ76276, highly similar to Homo sapiens pentatricopeptide repeat domain 1 (PTCD1), mRNAImported
Gene namesi
Name:PTCD1Imported
ORF Names:hCG_2023422Imported, tcag7.1151Imported
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134877986.

Expressioni

Gene expression databases

BgeeiENSG00000106246.
ExpressionAtlasiA4D273. baseline and differential.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini167 – 336PPR_longInterPro annotationAdd BLAST170

Phylogenomic databases

eggNOGiKOG4092. Eukaryota.
KOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOVERGENiHBG053748.
KOiK17710.
OrthoDBiEOG091G02E4.

Family and domain databases

InterProiView protein in InterPro
IPR002885. Pentatricopeptide_repeat.
IPR033443. PPR_long.
PfamiView protein in Pfam
PF13812. PPR_3. 1 hit.
PF17177. PPR_long. 1 hit.
TIGRFAMsiTIGR00756. PPR. 1 hit.
PROSITEiView protein in PROSITE
PS51375. PPR. 7 hits.

Sequencei

Sequence statusi: Complete.

A4D273-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDFVRLARLF ARARPMGLFI LQHLDPCRAR WAGGREGLMR PMWAPFSSSS
60 70 80 90 100
SQLPLGQERQ ENTGSLGSDP SHSNSTATQE EDEEEEESFG TLSDKYSSRR
110 120 130 140 150
LFRKSAAQFH NLRFGERRDE QMEPEPKLWR GRRNTPYWYF LQCKHLIKEG
160 170 180 190 200
KLVEALDLFE RQMLKEERLQ PMESNYTVLI GGCGRVGYLK KAFNLYNQMK
210 220 230 240 250
KRDLEPSDAT YTALFNVCAE SPWKDSALQS ALKLRQQLQA KNFELNLKTY
260 270 280 290 300
HALLKMAAKC ADLRMCLDVF KEIIHKGHVV TEETFSFLLM GCIQDKKTGF
310 320 330 340 350
RYALQVWRLM LSLGLQPSRD SYNLLLVAAR DCGLGDPQVA SELLLKPREE
360 370 380 390 400
ATVLQPPVSR QRPRRTAQAK AGNLMSAMLH VEALERQLFL EPSQALGPPE
410 420 430 440 450
PPEARVPGKA QPEVDTKAEP SHTAALTAVA LKPPPVELEV NLLTPGAVPP
460 470 480 490 500
TVVSFGTVTT PADRLALIGG LEGFLSKMAE HRQQPDIRTL TLLAEVVESG
510 520 530 540 550
SPAESLLLAL LDEHQVEADL TFFNTLVRKK SKLGDLEGAK ALLPVLAKRG
560 570 580 590 600
LVPNLQTFCN LAIGCHRPKD GLQLLTDMKK SQVTPNTHIY SALINAAIRK
610 620 630 640 650
LNYTYLISIL KDMKQNRVPV NEVVIRQLEF AAQYPPTFDR YQGKNTYLEK
660 670 680 690 700
IDGFRAYYKQ WLTVMPAEET PHPWQKFRTK PQGDQDTGKE ADDGCALGGR
Length:700
Mass (Da):78,856
Last modified:April 3, 2007 - v1
Checksum:iE5075DC65C3D40E0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK291004 mRNA. Translation: BAF83693.1.
CH236956 Genomic DNA. Translation: EAL23880.1.
CH471091 Genomic DNA. Translation: EAW76669.1.
RefSeqiNP_056360.2. NM_015545.3.
UniGeneiHs.632313.
Hs.729925.

Genome annotation databases

GeneIDi26024.
KEGGihsa:26024.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiA4D273_HUMAN
AccessioniPrimary (citable) accession number: A4D273
Entry historyiIntegrated into UniProtKB/TrEMBL: April 3, 2007
Last sequence update: April 3, 2007
Last modified: July 5, 2017
This is version 86 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.