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Protein
Submitted name:

LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)

Gene

LSM8

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)Imported
Submitted name:
LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae), isoform CRA_bImported
Submitted name:
cDNA, FLJ92203, Homo sapiens LSM8 homolog, U6 small nuclear RNA associated (S.cerevisiae) (LSM8), mRNAImported
Gene namesi
Name:LSM8Imported
ORF Names:hCG_14869Imported, tcag7.58Imported
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA165618166.

Expressioni

Gene expression databases

BgeeiENSG00000128534.
ExpressionAtlasiA4D0W0. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000249299.

Structurei

3D structure databases

SMRiA4D0W0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 72SmInterPro annotationAdd BLAST70

Phylogenomic databases

eggNOGiKOG1784. Eukaryota.
ENOG41124H7. LUCA.
HOVERGENiHBG105578.
KOiK12627.
OMAiSYVNHTV.
OrthoDBiEOG091G126L.
PhylomeDBiA4D0W0.

Family and domain databases

InterProiIPR010920. LSM_dom.
IPR001163. LSM_dom_euk/arc.
[Graphical view]
PfamiPF01423. LSM. 1 hit.
[Graphical view]
SMARTiSM00651. Sm. 1 hit.
[Graphical view]
SUPFAMiSSF50182. SSF50182. 1 hit.

Sequencei

Sequence statusi: Complete.

A4D0W0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSALENYIN RTVAVITSDG RMIVGTLKGF DQTINLILDE SHERVFSSSQ
60 70 80 90
GVEQVVLGLY IVRGDNVAVI GEIDEETDSA LDLGNIRAEP LNSVAH
Length:96
Mass (Da):10,403
Last modified:April 3, 2007 - v1
Checksum:i15D26E6B75AA2EE1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK311936 mRNA. Translation: BAG34877.1.
CH236947 Genomic DNA. Translation: EAL24351.1.
CH471070 Genomic DNA. Translation: EAW83537.1.
RefSeqiNP_057284.1. NM_016200.4.
UniGeneiHs.655046.

Genome annotation databases

GeneIDi51691.
KEGGihsa:51691.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK311936 mRNA. Translation: BAG34877.1.
CH236947 Genomic DNA. Translation: EAL24351.1.
CH471070 Genomic DNA. Translation: EAW83537.1.
RefSeqiNP_057284.1. NM_016200.4.
UniGeneiHs.655046.

3D structure databases

SMRiA4D0W0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000249299.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi51691.
KEGGihsa:51691.

Organism-specific databases

CTDi51691.
PharmGKBiPA165618166.

Phylogenomic databases

eggNOGiKOG1784. Eukaryota.
ENOG41124H7. LUCA.
HOVERGENiHBG105578.
KOiK12627.
OMAiSYVNHTV.
OrthoDBiEOG091G126L.
PhylomeDBiA4D0W0.

Miscellaneous databases

GenomeRNAii51691.

Gene expression databases

BgeeiENSG00000128534.
ExpressionAtlasiA4D0W0. baseline and differential.

Family and domain databases

InterProiIPR010920. LSM_dom.
IPR001163. LSM_dom_euk/arc.
[Graphical view]
PfamiPF01423. LSM. 1 hit.
[Graphical view]
SMARTiSM00651. Sm. 1 hit.
[Graphical view]
SUPFAMiSSF50182. SSF50182. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiA4D0W0_HUMAN
AccessioniPrimary (citable) accession number: A4D0W0
Entry historyiIntegrated into UniProtKB/TrEMBL: April 3, 2007
Last sequence update: April 3, 2007
Last modified: January 18, 2017
This is version 84 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.