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Protein
Submitted name:

LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)

Gene

LSM8

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)Imported
Submitted name:
LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae), isoform CRA_bImported
Submitted name:
cDNA, FLJ92203, Homo sapiens LSM8 homolog, U6 small nuclear RNA associated (S.cerevisiae) (LSM8), mRNAImported
Gene namesi
Name:LSM8Imported
ORF Names:hCG_14869Imported, tcag7.58Imported
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA165618166.

Expressioni

Gene expression databases

BgeeiENSG00000128534.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000249299.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 72SmInterPro annotationAdd BLAST70

Phylogenomic databases

eggNOGiKOG1784. Eukaryota.
ENOG41124H7. LUCA.
HOVERGENiHBG105578.
KOiK12627.
OMAiSYVNHTV.
OrthoDBiEOG091G126L.

Family and domain databases

InterProiIPR010920. LSM_dom.
IPR001163. LSM_dom_euk/arc.
[Graphical view]
PfamiPF01423. LSM. 1 hit.
[Graphical view]
SMARTiSM00651. Sm. 1 hit.
[Graphical view]
SUPFAMiSSF50182. SSF50182. 1 hit.

Sequencei

Sequence statusi: Complete.

A4D0W0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSALENYIN RTVAVITSDG RMIVGTLKGF DQTINLILDE SHERVFSSSQ
60 70 80 90
GVEQVVLGLY IVRGDNVAVI GEIDEETDSA LDLGNIRAEP LNSVAH
Length:96
Mass (Da):10,403
Last modified:April 3, 2007 - v1
Checksum:i15D26E6B75AA2EE1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK311936 mRNA. Translation: BAG34877.1.
CH236947 Genomic DNA. Translation: EAL24351.1.
CH471070 Genomic DNA. Translation: EAW83537.1.
RefSeqiNP_057284.1. NM_016200.4.
UniGeneiHs.655046.

Genome annotation databases

GeneIDi51691.
KEGGihsa:51691.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK311936 mRNA. Translation: BAG34877.1.
CH236947 Genomic DNA. Translation: EAL24351.1.
CH471070 Genomic DNA. Translation: EAW83537.1.
RefSeqiNP_057284.1. NM_016200.4.
UniGeneiHs.655046.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000249299.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi51691.
KEGGihsa:51691.

Organism-specific databases

CTDi51691.
PharmGKBiPA165618166.

Phylogenomic databases

eggNOGiKOG1784. Eukaryota.
ENOG41124H7. LUCA.
HOVERGENiHBG105578.
KOiK12627.
OMAiSYVNHTV.
OrthoDBiEOG091G126L.

Miscellaneous databases

GenomeRNAii51691.

Gene expression databases

BgeeiENSG00000128534.

Family and domain databases

InterProiIPR010920. LSM_dom.
IPR001163. LSM_dom_euk/arc.
[Graphical view]
PfamiPF01423. LSM. 1 hit.
[Graphical view]
SMARTiSM00651. Sm. 1 hit.
[Graphical view]
SUPFAMiSSF50182. SSF50182. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiA4D0W0_HUMAN
AccessioniPrimary (citable) accession number: A4D0W0
Entry historyi
Integrated into UniProtKB/TrEMBL: April 3, 2007
Last sequence update: April 3, 2007
Last modified: November 2, 2016
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.