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Protein

Putative transmembrane protein LINC00998

Gene

LINC00998

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Names & Taxonomyi

Protein namesi
Recommended name:
Putative transmembrane protein LINC00998
Gene namesi
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 7

Organism-specific databases

HGNCiHGNC:48953. LINC00998.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei30 – 50HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000214194.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 24Sequence analysisAdd BLAST24
ChainiPRO_000034937025 – 59Putative transmembrane protein LINC00998Add BLAST35

Proteomic databases

PaxDbiA4D0T7.
PRIDEiA4D0T7.

Expressioni

Gene expression databases

BgeeiENSG00000214194.

Structurei

3D structure databases

ProteinModelPortaliA4D0T7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410JHJQ. Eukaryota.
ENOG4111495. LUCA.
GeneTreeiENSGT00400000023684.
PhylomeDBiA4D0T7.

Family and domain databases

InterProiIPR031742. DUF4730.
[Graphical view]
PfamiPF15873. DUF4730. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A4D0T7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSVSTQLSL VLMSLLLVLP VVEAVEAGDA IALLLGVVLS ITGICACLGV

YARKRNGQM
Length:59
Mass (Da):6,102
Last modified:June 11, 2014 - v2
Checksum:i73A30C8FC25ED645
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX537645 mRNA. No translation available.
AC073346 Genomic DNA. No translation available.
CH236947 Genomic DNA. Translation: EAL24371.1.
BC107860 mRNA. No translation available.
UniGeneiHs.117929.

Genome annotation databases

EnsembliENST00000397764; ENSP00000490095; ENSG00000214194.
ENST00000441359; ENSP00000490064; ENSG00000214194.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX537645 mRNA. No translation available.
AC073346 Genomic DNA. No translation available.
CH236947 Genomic DNA. Translation: EAL24371.1.
BC107860 mRNA. No translation available.
UniGeneiHs.117929.

3D structure databases

ProteinModelPortaliA4D0T7.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiA4D0T7.
PRIDEiA4D0T7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000397764; ENSP00000490095; ENSG00000214194.
ENST00000441359; ENSP00000490064; ENSG00000214194.

Organism-specific databases

GeneCardsiLINC00998.
HGNCiHGNC:48953. LINC00998.
neXtProtiNX_A4D0T7.
OpenTargetsiENSG00000214194.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410JHJQ. Eukaryota.
ENOG4111495. LUCA.
GeneTreeiENSGT00400000023684.
PhylomeDBiA4D0T7.

Gene expression databases

BgeeiENSG00000214194.

Family and domain databases

InterProiIPR031742. DUF4730.
[Graphical view]
PfamiPF15873. DUF4730. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYG055_HUMAN
AccessioniPrimary (citable) accession number: A4D0T7
Secondary accession number(s): Q32Q38
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: June 11, 2014
Last modified: November 2, 2016
This is version 52 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

Product of a dubious CDS prediction.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 7
    Human chromosome 7: entries, gene names and cross-references to MIM

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.