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Protein

Alpha-amylase

Gene

RB2501_00136

Organism
Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciRBIF313596:GH7G-2620-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:RB2501_00136Imported
OrganismiRobiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146)Imported
Taxonomic identifieri313596 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeRobiginitalea
ProteomesiUP000009049 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi313596.RB2501_00136.

Structurei

3D structure databases

ProteinModelPortaliA4CNH0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000273912.
KOiK01176.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di3.20.20.80. 2 hits.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

A4CNH0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHRLLLILAL SVSIYSCKPE PKTAQLPATE QVADQGRDSV PFLWEAANIY
60 70 80 90 100
FLLTDRFRNG NPENDLNFDR VNPTGPLRGF MGGDLAGITE KIKDGYFTDL
110 120 130 140 150
GINAIWFTPV VEQVHGDTDE GTGNTYAYHG YWAKDWTALD PNFGTRDELA
160 170 180 190 200
ELVAAAHAKG IRILMDVVLN HTGPVTGEDP AWPESWVRLD PTCNFEDYQG
210 220 230 240 250
TTACTLVENL PDIRTESSEA VVLPDALLAK WKAEGRLSEE LDELQVFFDR
260 270 280 290 300
TGYPRAPRYY IIKWLTDYVN DLGIDGFRVD TAKHVNEDAW SELYREAAYA
310 320 330 340 350
FQSWKRKHPG KVLDDTPFYM VGEVYGYGAS SGRDYDFGDR TVDYFDHGFK
360 370 380 390 400
SLINFELKSD AGQSYDRIFE KYSTLLHDDL NGLGIVNYLS SHDDGSPFDP
410 420 430 440 450
DRSKPFRSAN ILLLTPGASQ VYYGDESARG LVVEGTVGDA TLRSFMNWEE
460 470 480 490 500
LDSLPEKQEI LAHWQKLGQF RNHHPAIGAG RHKRLASQPY VFSRTYTDGD
510 520 530 540 550
YRDKVAVGLD LPEGPKSLYV RGFFGDGTVL RDAYSGSEAT VSGGRVELDT
560
PYPIALLELA D
Length:561
Mass (Da):62,894
Last modified:April 3, 2007 - v1
Checksum:iC02AE128B94CBC05
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001712 Genomic DNA. Translation: EAR14437.1.
RefSeqiWP_015755225.1. NC_013222.1.

Genome annotation databases

EnsemblBacteriaiEAR14437; EAR14437; RB2501_00136.
KEGGirbi:RB2501_00136.
PATRICi23336551. VBIRobBif55773_2528.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001712 Genomic DNA. Translation: EAR14437.1.
RefSeqiWP_015755225.1. NC_013222.1.

3D structure databases

ProteinModelPortaliA4CNH0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi313596.RB2501_00136.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiEAR14437; EAR14437; RB2501_00136.
KEGGirbi:RB2501_00136.
PATRICi23336551. VBIRobBif55773_2528.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000273912.
KOiK01176.
OrthoDBiEOG65QWH3.

Enzyme and pathway databases

BioCyciRBIF313596:GH7G-2620-MONOMER.

Family and domain databases

Gene3Di3.20.20.80. 2 hits.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Robiginitalea biformata HTCC2501."
    Oh H.M., Giovannoni S.J., Lee K., Ferriera S., Johnson J., Cho J.C.
    J. Bacteriol. 191:7144-7145(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-864 / HTCC2501 / KCTC 12146Imported.

Entry informationi

Entry nameiA4CNH0_ROBBH
AccessioniPrimary (citable) accession number: A4CNH0
Entry historyi
Integrated into UniProtKB/TrEMBL: April 3, 2007
Last sequence update: April 3, 2007
Last modified: July 22, 2015
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.