A4CH40 (A4CH40_ROBBH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase EMBL EAR16248.1

Gene names

Ordered Locus Names:

RB2501_05100

Organism

Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146) [Complete proteome] [HAMAP] EMBL EAR16248.1

Taxonomic identifier

313596 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Robiginitalea › Robiginitalea biformata

Protein attributes

Sequence length	535 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL EAR16248.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A4CH40 [UniParc]. Last modified April 3, 2007. Version 1. Checksum: F5FD057239AFB046	FASTA	535	60,853
	10 20 30 40 50 60 MRAFAELIRT LDATNKTNVK VDALSSYFDS APGPDKVWTI AILSHRRPPR PVNTRLLREW 70 80 90 100 110 120 ASELAGIPLW LFEESYHIVG DLAETIALVI PQSGNPDSGA RSLSDYLEDI VALRGREESG 130 140 150 160 170 180 KKAYLQENWQ KLGFYERFVL TKFMTGGFRI GISQKLMTRA LSQATGIGED LLAFRLMGNW 190 200 210 220 230 240 DPANTSFQEL VLQEQQAENQ SRPYPFYLAY PVDETPEDLG DPSAWLMEHK WDGIRAQLIV 250 260 270 280 290 300 RGGTHFLWSR GEELITGSYP ELADLAEALP DGTVIDGEIL PYPKGQVGSF NDLQKRLGRK 310 320 330 340 350 360 KVTNALLQKI PVILRAYDLL EWKGKDIRDL PYTERRALLD PLIEPLQADP NLPADLSATL 370 380 390 400 410 420 EIKDWDAARK ERGRARELRS EGLMLKRRAS AYGVGRKKGD WWKWKVDPFT VDAVLTYAMR 430 440 450 460 470 480 GHGRRSNLFT DYTFALWADT ENGRELVTFA KAYSGLTDAE FRQVDAWIKR NTLERFGPVR 490 500 510 520 530 SVKPEHVFEI AFEGIARSGR HKSGFATRFP RIVRWRKDKP ISEANTLAEL ENMIP

References

[1]

"Complete genome sequence of Robiginitalea biformata HTCC2501." Oh H.M., Giovannoni S.J., Lee K., Ferriera S., Johnson J., Cho J.C. J. Bacteriol. 191:7144-7145(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-864 / HTCC2501 / KCTC 12146.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001712 Genomic DNA. Translation: EAR16248.1.
RefSeq	YP_003194027.1. NC_013222.1.
3D structure databases
ProteinModelPortal	A4CH40.
ModBase	Search...
Protein-protein interaction databases
STRING	313596.RB2501_05100.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EAR16248; EAR16248; RB2501_05100.
GeneID	8454716.
KEGG	rbi:RB2501_05100.
PATRIC	23332117. VBIRobBif55773_0342.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
ProtClustDB	CLSK851907.
Enzyme and pathway databases
BioCyc	RBIF313596:GH7G-364-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF117018. SSF117018. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A4CH40_ROBBH

Accession

Primary (citable) accession number: A4CH40

Entry history

Integrated into UniProtKB/TrEMBL:	April 3, 2007
Last sequence update:	April 3, 2007
Last modified:	May 29, 2013
This is version 40 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)