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A4CH40

- A4CH40_ROBBH

UniProt

A4CH40 - A4CH40_ROBBH

Protein
Submitted name:

DNA ligase

Gene

RB2501_05100

Organism
Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 45 (01 Oct 2014)
      Sequence version 1 (03 Apr 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRBIF313596:GH7G-364-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligaseImported
    Gene namesi
    Ordered Locus Names:RB2501_05100Imported
    OrganismiRobiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146)Imported
    Taxonomic identifieri313596 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeRobiginitalea
    ProteomesiUP000009049: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi313596.RB2501_05100.

    Structurei

    3D structure databases

    ProteinModelPortaliA4CH40.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A4CH40-1 [UniParc]FASTAAdd to Basket

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    MRAFAELIRT LDATNKTNVK VDALSSYFDS APGPDKVWTI AILSHRRPPR    50
    PVNTRLLREW ASELAGIPLW LFEESYHIVG DLAETIALVI PQSGNPDSGA 100
    RSLSDYLEDI VALRGREESG KKAYLQENWQ KLGFYERFVL TKFMTGGFRI 150
    GISQKLMTRA LSQATGIGED LLAFRLMGNW DPANTSFQEL VLQEQQAENQ 200
    SRPYPFYLAY PVDETPEDLG DPSAWLMEHK WDGIRAQLIV RGGTHFLWSR 250
    GEELITGSYP ELADLAEALP DGTVIDGEIL PYPKGQVGSF NDLQKRLGRK 300
    KVTNALLQKI PVILRAYDLL EWKGKDIRDL PYTERRALLD PLIEPLQADP 350
    NLPADLSATL EIKDWDAARK ERGRARELRS EGLMLKRRAS AYGVGRKKGD 400
    WWKWKVDPFT VDAVLTYAMR GHGRRSNLFT DYTFALWADT ENGRELVTFA 450
    KAYSGLTDAE FRQVDAWIKR NTLERFGPVR SVKPEHVFEI AFEGIARSGR 500
    HKSGFATRFP RIVRWRKDKP ISEANTLAEL ENMIP 535
    Length:535
    Mass (Da):60,853
    Last modified:April 3, 2007 - v1
    Checksum:iF5FD057239AFB046
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001712 Genomic DNA. Translation: EAR16248.1.
    RefSeqiWP_015753005.1. NC_013222.1.
    YP_003194027.1. NC_013222.1.

    Genome annotation databases

    EnsemblBacteriaiEAR16248; EAR16248; RB2501_05100.
    GeneIDi8454716.
    KEGGirbi:RB2501_05100.
    PATRICi23332117. VBIRobBif55773_0342.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001712 Genomic DNA. Translation: EAR16248.1 .
    RefSeqi WP_015753005.1. NC_013222.1.
    YP_003194027.1. NC_013222.1.

    3D structure databases

    ProteinModelPortali A4CH40.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 313596.RB2501_05100.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai EAR16248 ; EAR16248 ; RB2501_05100 .
    GeneIDi 8454716.
    KEGGi rbi:RB2501_05100.
    PATRICi 23332117. VBIRobBif55773_0342.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci RBIF313596:GH7G-364-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Robiginitalea biformata HTCC2501."
      Oh H.M., Giovannoni S.J., Lee K., Ferriera S., Johnson J., Cho J.C.
      J. Bacteriol. 191:7144-7145(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC BAA-864 / HTCC2501 / KCTC 12146Imported.

    Entry informationi

    Entry nameiA4CH40_ROBBH
    AccessioniPrimary (citable) accession number: A4CH40
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 3, 2007
    Last sequence update: April 3, 2007
    Last modified: October 1, 2014
    This is version 45 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3