Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

DNA ligase

Gene

RB2501_05100

Organism
Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRBIF313596:GH7G-364-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
Ordered Locus Names:RB2501_05100Imported
OrganismiRobiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146)Imported
Taxonomic identifieri313596 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeRobiginitalea
ProteomesiUP000009049 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi313596.RB2501_05100.

Structurei

3D structure databases

ProteinModelPortaliA4CH40.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4CH40-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRAFAELIRT LDATNKTNVK VDALSSYFDS APGPDKVWTI AILSHRRPPR
60 70 80 90 100
PVNTRLLREW ASELAGIPLW LFEESYHIVG DLAETIALVI PQSGNPDSGA
110 120 130 140 150
RSLSDYLEDI VALRGREESG KKAYLQENWQ KLGFYERFVL TKFMTGGFRI
160 170 180 190 200
GISQKLMTRA LSQATGIGED LLAFRLMGNW DPANTSFQEL VLQEQQAENQ
210 220 230 240 250
SRPYPFYLAY PVDETPEDLG DPSAWLMEHK WDGIRAQLIV RGGTHFLWSR
260 270 280 290 300
GEELITGSYP ELADLAEALP DGTVIDGEIL PYPKGQVGSF NDLQKRLGRK
310 320 330 340 350
KVTNALLQKI PVILRAYDLL EWKGKDIRDL PYTERRALLD PLIEPLQADP
360 370 380 390 400
NLPADLSATL EIKDWDAARK ERGRARELRS EGLMLKRRAS AYGVGRKKGD
410 420 430 440 450
WWKWKVDPFT VDAVLTYAMR GHGRRSNLFT DYTFALWADT ENGRELVTFA
460 470 480 490 500
KAYSGLTDAE FRQVDAWIKR NTLERFGPVR SVKPEHVFEI AFEGIARSGR
510 520 530
HKSGFATRFP RIVRWRKDKP ISEANTLAEL ENMIP
Length:535
Mass (Da):60,853
Last modified:April 3, 2007 - v1
Checksum:iF5FD057239AFB046
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001712 Genomic DNA. Translation: EAR16248.1.
RefSeqiWP_015753005.1. NC_013222.1.
YP_003194027.1. NC_013222.1.

Genome annotation databases

EnsemblBacteriaiEAR16248; EAR16248; RB2501_05100.
KEGGirbi:RB2501_05100.
PATRICi23332117. VBIRobBif55773_0342.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001712 Genomic DNA. Translation: EAR16248.1.
RefSeqiWP_015753005.1. NC_013222.1.
YP_003194027.1. NC_013222.1.

3D structure databases

ProteinModelPortaliA4CH40.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi313596.RB2501_05100.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiEAR16248; EAR16248; RB2501_05100.
KEGGirbi:RB2501_05100.
PATRICi23332117. VBIRobBif55773_0342.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciRBIF313596:GH7G-364-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Robiginitalea biformata HTCC2501."
    Oh H.M., Giovannoni S.J., Lee K., Ferriera S., Johnson J., Cho J.C.
    J. Bacteriol. 191:7144-7145(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-864 / HTCC2501 / KCTC 12146Imported.

Entry informationi

Entry nameiA4CH40_ROBBH
AccessioniPrimary (citable) accession number: A4CH40
Entry historyi
Integrated into UniProtKB/TrEMBL: April 3, 2007
Last sequence update: April 3, 2007
Last modified: May 27, 2015
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.