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A4CH40 (A4CH40_ROBBH) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length535 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
A4CH40 [UniParc].

Last modified April 3, 2007. Version 1.
Checksum: F5FD057239AFB046

FASTA53560,853
        10         20         30         40         50         60 
MRAFAELIRT LDATNKTNVK VDALSSYFDS APGPDKVWTI AILSHRRPPR PVNTRLLREW 

        70         80         90        100        110        120 
ASELAGIPLW LFEESYHIVG DLAETIALVI PQSGNPDSGA RSLSDYLEDI VALRGREESG 

       130        140        150        160        170        180 
KKAYLQENWQ KLGFYERFVL TKFMTGGFRI GISQKLMTRA LSQATGIGED LLAFRLMGNW 

       190        200        210        220        230        240 
DPANTSFQEL VLQEQQAENQ SRPYPFYLAY PVDETPEDLG DPSAWLMEHK WDGIRAQLIV 

       250        260        270        280        290        300 
RGGTHFLWSR GEELITGSYP ELADLAEALP DGTVIDGEIL PYPKGQVGSF NDLQKRLGRK 

       310        320        330        340        350        360 
KVTNALLQKI PVILRAYDLL EWKGKDIRDL PYTERRALLD PLIEPLQADP NLPADLSATL 

       370        380        390        400        410        420 
EIKDWDAARK ERGRARELRS EGLMLKRRAS AYGVGRKKGD WWKWKVDPFT VDAVLTYAMR 

       430        440        450        460        470        480 
GHGRRSNLFT DYTFALWADT ENGRELVTFA KAYSGLTDAE FRQVDAWIKR NTLERFGPVR 

       490        500        510        520        530 
SVKPEHVFEI AFEGIARSGR HKSGFATRFP RIVRWRKDKP ISEANTLAEL ENMIP 

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References

[1]"Complete genome sequence of Robiginitalea biformata HTCC2501."
Oh H.M., Giovannoni S.J., Lee K., Ferriera S., Johnson J., Cho J.C.
J. Bacteriol. 191:7144-7145(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-864 / HTCC2501 / KCTC 12146.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001712 Genomic DNA. Translation: EAR16248.1.
RefSeqYP_003194027.1. NC_013222.1.

3D structure databases

ProteinModelPortalA4CH40.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING313596.RB2501_05100.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEAR16248; EAR16248; RB2501_05100.
GeneID8454716.
KEGGrbi:RB2501_05100.
PATRIC23332117. VBIRobBif55773_0342.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000036007.
KOK01971.
OrthoDBEOG6Q8HXT.

Enzyme and pathway databases

BioCycRBIF313596:GH7G-364-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA4CH40_ROBBH
AccessionPrimary (citable) accession number: A4CH40
Entry history
Integrated into UniProtKB/TrEMBL: April 3, 2007
Last sequence update: April 3, 2007
Last modified: May 14, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)