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A4CGS8

- A4CGS8_ROBBH

UniProt

A4CGS8 - A4CGS8_ROBBH

Protein

Xylose isomerase

Gene

xylA

Organism
Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 52 (01 Oct 2014)
      Sequence version 1 (03 Apr 2007)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

    Cofactori

    Binds 2 magnesium ions per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei106 – 1061UniRule annotation
    Active sitei109 – 1091UniRule annotation
    Metal bindingi237 – 2371Magnesium 1UniRule annotation
    Metal bindingi273 – 2731Magnesium 1UniRule annotation
    Metal bindingi273 – 2731Magnesium 2UniRule annotation
    Metal bindingi276 – 2761Magnesium 2UniRule annotation
    Metal bindingi301 – 3011Magnesium 1UniRule annotation
    Metal bindingi312 – 3121Magnesium 2UniRule annotation
    Metal bindingi314 – 3141Magnesium 2UniRule annotation
    Metal bindingi344 – 3441Magnesium 1UniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: UniProtKB-HAMAP
    2. xylose isomerase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. D-xylose metabolic process Source: UniProtKB-HAMAP
    2. pentose-phosphate shunt Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotationImported

    Keywords - Biological processi

    Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotation, Xylose metabolismUniRule annotationSAAS annotation

    Keywords - Ligandi

    MagnesiumUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciRBIF313596:GH7G-252-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
    Gene namesi
    Name:xylAUniRule annotation
    Ordered Locus Names:RB2501_04540Imported
    OrganismiRobiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146)Imported
    Taxonomic identifieri313596 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeRobiginitalea
    ProteomesiUP000009049: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotationSAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotationSAAS annotation

    Interactioni

    Subunit structurei

    Homotetramer.UniRule annotationSAAS annotation

    Protein-protein interaction databases

    STRINGi313596.RB2501_04540.

    Structurei

    3D structure databases

    ProteinModelPortaliA4CGS8.
    SMRiA4CGS8. Positions 7-441.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the xylose isomerase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG2115.
    HOGENOMiHOG000252293.
    KOiK01805.
    OrthoDBiEOG62NX4R.

    Family and domain databases

    Gene3Di3.20.20.150. 1 hit.
    HAMAPiMF_00455. Xylose_isom_A.
    InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view]
    PfamiPF01261. AP_endonuc_2. 1 hit.
    [Graphical view]
    PRINTSiPR00688. XYLOSISMRASE.
    SUPFAMiSSF51658. SSF51658. 1 hit.
    TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
    PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A4CGS8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MITTGDKEYF KNIGKIPFEG KESDNPLAFK YYDENQKVGD KTMKEHFRFA    50
    VCYWHTFTGL GADPFGAPTQ QFPWLENSDP VQQAKDKMDA AFEFITKIGA 100
    PYYCFHDYDL IAEGPTLAES ERRLDIITDY AREKMDASGV KLLWGTANCF 150
    GNPRYMNGAA TNPDFKVLAA AGAQVKNALD ATIKLDGENY VFWGGREGYM 200
    SLLNTDMKRE QDHMARFLHM ARDYARKQGF KGVFFIEPKP MEPTKHQYDF 250
    DSATVLAFLS KYDLLDDFKL NIEVNHATLA QHTFEHELQV AADNGLLGSI 300
    DANRGDYQNG WDTDQFPVDV YELTQAMLVI LEAGGFQGGG VNFDAKIRRN 350
    STDLEDIFYA HIGGMDAFAR ALLAAHAVRT QSDFLKMRKD RYASFDSGKG 400
    AEFEAGKLSL EDLHKFAGAN QEIPRTSGRQ ELYENIINQF I 441
    Length:441
    Mass (Da):49,844
    Last modified:April 3, 2007 - v1
    Checksum:i5F8537C7E025450B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001712 Genomic DNA. Translation: EAR16136.1.
    RefSeqiWP_012813831.1. NC_013222.1.
    YP_003193917.1. NC_013222.1.

    Genome annotation databases

    EnsemblBacteriaiEAR16136; EAR16136; RB2501_04540.
    GeneIDi8454604.
    KEGGirbi:RB2501_04540.
    PATRICi23331909. VBIRobBif55773_0239.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001712 Genomic DNA. Translation: EAR16136.1 .
    RefSeqi WP_012813831.1. NC_013222.1.
    YP_003193917.1. NC_013222.1.

    3D structure databases

    ProteinModelPortali A4CGS8.
    SMRi A4CGS8. Positions 7-441.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 313596.RB2501_04540.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai EAR16136 ; EAR16136 ; RB2501_04540 .
    GeneIDi 8454604.
    KEGGi rbi:RB2501_04540.
    PATRICi 23331909. VBIRobBif55773_0239.

    Phylogenomic databases

    eggNOGi COG2115.
    HOGENOMi HOG000252293.
    KOi K01805.
    OrthoDBi EOG62NX4R.

    Enzyme and pathway databases

    BioCyci RBIF313596:GH7G-252-MONOMER.

    Family and domain databases

    Gene3Di 3.20.20.150. 1 hit.
    HAMAPi MF_00455. Xylose_isom_A.
    InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view ]
    Pfami PF01261. AP_endonuc_2. 1 hit.
    [Graphical view ]
    PRINTSi PR00688. XYLOSISMRASE.
    SUPFAMi SSF51658. SSF51658. 1 hit.
    TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
    PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Robiginitalea biformata HTCC2501."
      Oh H.M., Giovannoni S.J., Lee K., Ferriera S., Johnson J., Cho J.C.
      J. Bacteriol. 191:7144-7145(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC BAA-864 / HTCC2501 / KCTC 12146Imported.

    Entry informationi

    Entry nameiA4CGS8_ROBBH
    AccessioniPrimary (citable) accession number: A4CGS8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 3, 2007
    Last sequence update: April 3, 2007
    Last modified: October 1, 2014
    This is version 52 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3