A4AV00 (A4AV00_MARSH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA polymerase III, epsilon subunit EMBL EAR00403.1

Gene names

Ordered Locus Names:

FB2170_13316 EMBL EAR00403.1

Organism

Maribacter sp. (strain HTCC2170 / KCCM 42371) [Complete proteome] [HAMAP]

Taxonomic identifier

313603 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Maribacter

Protein attributes

Sequence length	454 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Catalytic activity

Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). SAAS SAAS006054

Ontologies

Keywords
Biological process	DNA replication SAAS SAAS006054
Molecular function	DNA-directed DNA polymerase SAAS SAAS006054 Nucleotidyltransferase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA replication Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: InterPro DNA-directed DNA polymerase activity Inferred from electronic annotation. Source: UniProtKB-KW exonuclease activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A4AV00 [UniParc]. Last modified April 3, 2007. Version 1. Checksum: 794F7C161AD2C2BC	FASTA	454	52,016
	10 20 30 40 50 60 MYTILDIETT GGKYNEEGIT EIAIHKFDGH QVVDKFISLV NPEKDIQPFV VNLTGINNKM 70 80 90 100 110 120 LRTAPKFHEV AKRIVEITED SVLVAHNAQF DYRILRTEFR RLGYNFERKT LCTVDLSKYL 130 140 150 160 170 180 LPDAESYSLG KLVRSLGIPM SDRHRANGDA IATLKLFKLL LAKDSEKSII KDVVREETHG 190 200 210 220 230 240 ELSQRQLDIV EQMPSETGLY YMHDKKGEIL FIGKSTNIKK RVNQHFTKDG AKARQLQKET 250 260 270 280 290 300 KKITFEKTGS ELVALLKENE ELRKNHPKYN VNKRPKRLYG LYLCANDQGY KYFNIAVKKK 310 320 330 340 350 360 DKECITSFKS YVGAQNFLQK ITDEFQLCTK IGDIPSSKIP CSDQTEGNCH GACIGQENVE 370 380 390 400 410 420 SYNSRINTIL DKFSLAKKNI VIVDKGREIG EYSVILIRNG NLKGVGYYDL NHQINNIHIL 430 440 450 ESIITPMKGD DYSTFIVESY LRNKRVKKII DLNE

References

[1]

"Complete genome sequence of strain HTCC2170, a novel member of the genus Maribacter in the family Flavobacteriaceae." Oh H.M., Kang I., Yang S.J., Jang Y., Vergin K.L., Giovannoni S.J., Cho J.C. J. Bacteriol. 193:303-304(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HTCC2170 / KCCM 42371.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002157 Genomic DNA. Translation: EAR00403.1.
RefSeq	YP_003863518.1. NC_014472.1.
3D structure databases
ProteinModelPortal	A4AV00.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EAR00403; EAR00403; FB2170_13316.
GeneID	9720249.
KEGG	fbc:FB2170_13316.
PATRIC	42335397. VBIFlaBac16383_2946.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000025324.
KO	K02342.
ProtClustDB	CLSK847553.
Enzyme and pathway databases
BioCyc	MSP313603:GH3X-2893-MONOMER.
Family and domain databases
Gene3D	3.40.1440.10. 1 hit.
InterPro	IPR006054. DnaQ. IPR006055. Exonuclease. IPR013520. Exonuclease_RNaseT/DNA_pol3. IPR027299. GIY-YIG_dom. IPR000305. GIY-YIG_SF. IPR012337. RNaseH-like_dom. [Graphical view]
Pfam	PF01541. GIY-YIG. 1 hit. PF00929. RNase_T. 1 hit. [Graphical view]
SMART	SM00479. EXOIII. 1 hit. SM00465. GIYc. 1 hit. [Graphical view]
SUPFAM	SSF53098. RNaseH_fold. 1 hit. SSF82771. UvrC_N. 1 hit.
TIGRFAMs	TIGR00573. dnaq. 1 hit.
PROSITE	PS50164. GIY_YIG. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A4AV00_MARSH

Accession

Primary (citable) accession number: A4AV00

Entry history

Integrated into UniProtKB/TrEMBL:	April 3, 2007
Last sequence update:	April 3, 2007
Last modified:	May 1, 2013
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)