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A4AFX2 (A4AFX2_9ACTN) Unreviewed, UniProtKB/TrEMBL

Last modified December 11, 2013. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:A20C1_08358 EMBL EAR25878.1
Organismmarine actinobacterium PHSC20C1 EMBL EAR25878.1
Taxonomic identifier312284 [NCBI]
Taxonomic lineageBacteriaActinobacteria

Protein attributes

Sequence length388 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data. EMBL EAR25878.1

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding2151Magnesium PDB 3NO1
Metal binding2151Sodium
Metal binding2411Magnesium PDB 3NO1
Metal binding2411Sodium
Metal binding2581Sodium; via carbonyl oxygen
Metal binding2681Magnesium PDB 3NO1
Metal binding2681Sodium
Binding site1151Phosphate

Sequences

Sequence LengthMass (Da)Tools
A4AFX2 [UniParc].

Last modified April 3, 2007. Version 1.
Checksum: 32F2FB2DF83FCE2C

FASTA38843,439
        10         20         30         40         50         60 
MHDQRVHAER DPLDPQAHGL TITRIETIPM VAPLAREFRG SHYHMTHRAT IVTRVHTDAG 

        70         80         90        100        110        120 
IIGEAYTGDE HETMFDIDRI IHEELAPTLI GQDAMAIERL WDSGYKVTFD ILRDRRLGLV 

       130        140        150        160        170        180 
ALAAVNTAIW DAVGKALKMP LWKLWGGYRN ELPMIAIGGY YGEPLGSIAD EMHNYQELGL 

       190        200        210        220        230        240 
AGVKFKVGGL SAAEDAARIT AAREAAGDDF IICIDANQGY KPAVAVDLSR RIADLNIRWF 

       250        260        270        280        290        300 
EEPVEWHNDK RSMRDVRYQG SVPVCAGQTE FSASGCRDLM ETGAIDVCNF DSSWSGGPTA 

       310        320        330        340        350        360 
WLRTAAIATS YDVQMGHHEE PQVSTHLLAS QPHGTIAECF HPDRDPFWWN MITNRPKLNN 

       370        380 
GTLTLSDRPG LGWDLNWDYI DQYRVSKD 

« Hide

References

[1]Murray A., Ferriera S., Johnson J., Kravitz S., Halpern A., Remington K., Beeson K., Tran B., Rogers Y.-H., Friedman R., Venter J.C.
Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: PHSC20C1 EMBL EAR25878.1.
[2]"Crystal Structure of Mandelate racemase/muconate lactonizing enzyme from a Marine actinobacterium."
Satyanarayana L., Burley S.K., Swaminathan S.
Submitted (APR-2010) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.50 ANGSTROMS) OF 20-388.
[3]"Crystal Structure of Mandelate racemase/muconate lactonizing enzyme from a Marine actinobacterium in complex with magnesium."
Satyanarayana L., Burley S.K., Swaminathan S.
Submitted (JUN-2010) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.16 ANGSTROMS) OF 2-388 IN COMPLEX WITH MAGNESIUM.
[4]"Crystal structure of Mandelate racemase/muconate lactonizing enzyme."
Kim J., Toro R., Bhosle R., Al Obaidi N.F., Morisco L.L., Wasserman S.R., Sojitra S., Washington E., Scott Glenn A., Chowdhury S., Evans B., Hammonds J., Stead M., Hillerich B., Love J., Seidel R.D., Imker H.J., Gerlt J.A., Almo S.C.
Submitted (SEP-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.09 ANGSTROMS) IN COMPLEX WITH PHOSPHATE AND SODIUM.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AAOB01000002 Genomic DNA. Translation: EAR25878.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3MSYX-ray2.50A/B/C/D/E/F20-388[»]
3NO1X-ray2.16A/B/C/D/E/F2-388[»]
4H83X-ray2.09A/B/C/D/E/F1-388[»]
ProteinModelPortalA4AFX2.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEAR25878; EAR25878; A20C1_08358.
PATRIC25922165. VBIMarAct105506_0948.

Family and domain databases

InterProIPR013342. Mandelate_racemase_C.
IPR013341. Mandelate_racemase_N.
IPR001354. MR_MLE.
[Graphical view]
PANTHERPTHR13794. PTHR13794. 1 hit.
PfamPF01188. MR_MLE. 1 hit.
PF02746. MR_MLE_N. 1 hit.
[Graphical view]
SMARTSM00922. MR_MLE. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceA4AFX2.

Entry information

Entry nameA4AFX2_9ACTN
AccessionPrimary (citable) accession number: A4AFX2
Entry history
Integrated into UniProtKB/TrEMBL: April 3, 2007
Last sequence update: April 3, 2007
Last modified: December 11, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)