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Protein

Alpha-amylase

Gene

CA2559_00080

Organism
Croceibacter atlanticus (strain ATCC BAA-628 / HTCC2559 / KCTC 12090)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciCATL216432:GHTE-22-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:CA2559_00080Imported
OrganismiCroceibacter atlanticus (strain ATCC BAA-628 / HTCC2559 / KCTC 12090)Imported
Taxonomic identifieri216432 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeCroceibacter
Proteomesi
  • UP000002297 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence analysisAdd
BLAST
Chaini23 – 456434Alpha-amylaseSequence analysisPRO_5002660193Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi216432.CA2559_00080.

Structurei

3D structure databases

ProteinModelPortaliA3U4D8.
SMRiA3U4D8. Positions 45-456.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini49 – 394346AamyInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4105E5K. Bacteria.
COG0366. LUCA.
HOGENOMiHOG000031038.
KOiK01176.
OMAiAFYWDVP.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR015237. Alpha-amylase_C_pro.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

A3U4D8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKNYYKYSAL LLIALFLFSC NKDESFTETE TTSEESELTV NAMATIGSGV
60 70 80 90 100
MMQAFYWDVP AGGTWWNTVN GKLQNWSNAG IDAIWLPPVS KAQNGPFSMG
110 120 130 140 150
YDPFDYYDFG EYDQMGSVET RFGSRTELES LISTAHNNGI SVIADIVINH
160 170 180 190 200
NSGGASESNV FTGSDTYTDY NPASGIFYRT QYDFHPNDYH NNDSGAFGGF
210 220 230 240 250
PDLCHHKSYV QDHLWNNPNS VAKYYKNVLG FDGWRFDYVK GFEPWVVNSW
260 270 280 290 300
TNAVGGFSVG EYWDANVNTL EWWVNNSGSS AFDFACYYRM RDAFQNNDLN
310 320 330 340 350
NLSGDMLWKR NANKAVTFVA NHDTDEIFNN KLLAYAYILT HEGYPTLFYK
360 370 380 390 400
DYEEWLDKNK LNNLIWIHNN LAGGSTINLY TDVDEYIAKR NGYNNNGLVV
410 420 430 440 450
YLNISNNWQE RWVQTNWNST RIKDYTGNSS WEPVTQADGW VKIQVPPNGY

SVWSVK
Length:456
Mass (Da):52,137
Last modified:April 3, 2007 - v1
Checksum:i198615A6A9B48D74
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002046 Genomic DNA. Translation: EAP87105.1.
RefSeqiWP_013185787.1. NC_014230.1.

Genome annotation databases

EnsemblBacteriaiEAP87105; EAP87105; CA2559_00080.
KEGGicat:CA2559_00080.
PATRICi38155588. VBICroAtl46233_0018.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002046 Genomic DNA. Translation: EAP87105.1.
RefSeqiWP_013185787.1. NC_014230.1.

3D structure databases

ProteinModelPortaliA3U4D8.
SMRiA3U4D8. Positions 45-456.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi216432.CA2559_00080.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiEAP87105; EAP87105; CA2559_00080.
KEGGicat:CA2559_00080.
PATRICi38155588. VBICroAtl46233_0018.

Phylogenomic databases

eggNOGiENOG4105E5K. Bacteria.
COG0366. LUCA.
HOGENOMiHOG000031038.
KOiK01176.
OMAiAFYWDVP.

Enzyme and pathway databases

BioCyciCATL216432:GHTE-22-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR015237. Alpha-amylase_C_pro.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The complete genome sequence of Croceibacter atlanticus HTCC2559T."
    Oh H.M., Kang I., Ferriera S., Giovannoni S.J., Cho J.C.
    J. Bacteriol. 192:4796-4797(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-628 / HTCC2559 / KCTC 12090Imported.

Entry informationi

Entry nameiA3U4D8_CROAH
AccessioniPrimary (citable) accession number: A3U4D8
Entry historyi
Integrated into UniProtKB/TrEMBL: April 3, 2007
Last sequence update: April 3, 2007
Last modified: July 6, 2016
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.