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Protein
Submitted name:

Uncharacterized protein

Gene

ham-2

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • DNA binding transcription factor activity Source: WormBase
  • nucleic acid binding Source: InterPro

GO - Biological processi

  • cell fate determination Source: WormBase
  • cell migration Source: WormBase
  • regulation of neuron differentiation Source: WormBase

Keywordsi

LigandMetal-binding, Zinc

Enzyme and pathway databases

SignaLinkiA3RMS1

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:ham-2Imported
ORF Names:C07A12.1Imported, CELE_C07A12.1Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome X

Organism-specific databases

WormBaseiC07A12.1a ; CE39669 ; WBGene00001821 ; ham-2

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiWBGene00001821
ExpressionAtlasiA3RMS1 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliA3RMS1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini16 – 44C2H2-typeInterPro annotationAdd BLAST29
Domaini43 – 71C2H2-typeInterPro annotationAdd BLAST29

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili315 – 342Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis, Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00390000006159
HOGENOMiHOG000251636
OrthoDBiEOG091G0B56

Family and domain databases

InterProiView protein in InterPro
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 3 hits
SUPFAMiSSF57667 SSF57667, 2 hits
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 2 hits
PS50157 ZINC_FINGER_C2H2_2, 2 hits

Sequencei

Sequence statusi: Complete.

A3RMS1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPYRAELKRP DLKGSFPCSI CQKVFCHSSS LSRHRMQAHF KSYTCTTCNN
60 70 80 90 100
EIPSNDTLRS HMYRVHNITR MFMCRCCNWA FPDKTSLHIH MQSMLKNGTP
110 120 130 140 150
GEAAVLAKSS DDSTSESGSP RQSPPFSPDL LMQKRMLQVA ANNNNIGSIF
160 170 180 190 200
PTLLKSPDSK SMFPLDLSNM GPSQFLSAWL ANNPINTAAL NLAAQQTPSK
210 220 230 240 250
DSIQSSNISD YDDLEVQTTE EDIKFEVESS DVSPRSVIVK TEPTFKRELE
260 270 280 290 300
HDADIDVEGD DGEPPLKMTI DDKNIHISHD QPSPTVSDSH ISGGSSSHSG
310 320 330 340 350
ESLKCFDCQV ARGKLVAVED KCRAYEKTIR ELQVQVDFLR KIQPNPMPPV
360 370 380 390
MLPPPMMPMP SPGPNNLFQN PAMRMLLNNL IHMNRPSVVP
Length:390
Mass (Da):43,473
Last modified:April 3, 2007 - v1
Checksum:iCCF1A328C9E93383
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284606 Genomic DNA Translation: CCD63271.1
RefSeqiNP_001024363.2, NM_001029192.4
UniGeneiCel.772

Genome annotation databases

EnsemblMetazoaiC07A12.1a; C07A12.1a; WBGene00001821
GeneIDi180727
UCSCiC07A12.1b c. elegans

Similar proteinsi

Entry informationi

Entry nameiA3RMS1_CAEEL
AccessioniPrimary (citable) accession number: A3RMS1
Entry historyiIntegrated into UniProtKB/TrEMBL: April 3, 2007
Last sequence update: April 3, 2007
Last modified: January 31, 2018
This is version 83 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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