A3QHU0 (A3QHU0_SHELP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
4-aminobutyrate aminotransferase EMBL ABO25038.1
EC=2.6.1.19 EMBL ABO25038.1

Gene names

Ordered Locus Names:

Shew_3172

Organism

Shewanella loihica (strain ATCC BAA-1088 / PV-4) [Complete proteome] [HAMAP] EMBL ABO25038.1

Taxonomic identifier

323850 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella › Shewanella loihica

Protein attributes

Sequence length	426 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. RuleBase RU003560

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU003560
Molecular function	Aminotransferase EMBL ABO25038.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	gamma-aminobutyric acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	4-aminobutyrate transaminase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A3QHU0 [UniParc]. Last modified April 17, 2007. Version 1. Checksum: 7900242144C3AFD2	FASTA	426	45,163
	10 20 30 40 50 60 MSNAELQARK VQAIARGQGN AYPVYVERAL NAELWDVEGK RYIDFGTGIA VCNTGHSHPK 70 80 90 100 110 120 VVAAVKAQLD NFSHTCVMVN PYESAVALAE QLNRIAPGGS DKKAIFVTTG AEAVENCVKI 130 140 150 160 170 180 ARAHTGRRGV IAFNGGFHGR TNLTMALTGK ITPYKHQFGP FAGDIFHAPY PVAFHGVSVK 190 200 210 220 230 240 DSLKAIEHLF KVDIAPCDVA AIVVEPVQGE GGFYAAPPEF LQALRALCDQ HGIVLVMDEI 250 260 270 280 290 300 QTGFGRTGKM FSCEHAGVEP DLMTMAKGIA GGFPLAAVVG KSEIMDAPLP GGLGGTYGGS 310 320 330 340 350 360 PVGCVAALAV LEVMQEEQLV ERAVKIGDSF NQALSALKEQ YPQLIGEVRN QGAMIAMELV 370 380 390 400 410 420 IDGDIEQPNT ALTQAIIANA AAHGLVLLAC GFYGNVIRFL PALTISDEIM AEGLAKFKTL FESLVD

References

[1]

"Complete sequence of Shewanella loihica PV-4." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Mikhailova N., Romine M.F., Serres G., Fredrickson J., Tiedje J., Richardson P. Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-1088 / PV-4.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000606 Genomic DNA. Translation: ABO25038.1.
RefSeq	YP_001095297.1. NC_009092.1.
3D structure databases
ProteinModelPortal	A3QHU0.
SMR	A3QHU0. Positions 2-424.
ModBase	Search...
Protein-protein interaction databases
STRING	323850.Shew_3172.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABO25038; ABO25038; Shew_3172.
GeneID	4921949.
KEGG	slo:Shew_3172.
PATRIC	23518259. VBISheLoi132094_3169.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0160.
HOGENOM	HOG000020206.
KO	K07250.
OMA	RANVIRF.
ProtClustDB	CLSK938270.
Enzyme and pathway databases
BioCyc	SLOI323850:GHQJ-3296-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR004632. 4NH2But_aminotransferase_bac. IPR005814. Aminotrans_3. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
PANTHER	PTHR11986. PTHR11986. 1 hit.
Pfam	PF00202. Aminotran_3. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR00700. GABAtrnsam. 1 hit.
PROSITE	PS00600. AA_TRANSFER_CLASS_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A3QHU0_SHELP

Accession

Primary (citable) accession number: A3QHU0

Entry history

Integrated into UniProtKB/TrEMBL:	April 17, 2007
Last sequence update:	April 17, 2007
Last modified:	May 1, 2013
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)