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Protein
Submitted name:

Pyridoxal-dependent decarboxylase

Gene

Shew_2535

Organism
Shewanella loihica (strain ATCC BAA-1088 / PV-4)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciSLOI323850:GHQJ-2624-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Pyridoxal-dependent decarboxylaseImported
Gene namesi
Ordered Locus Names:Shew_2535Imported
OrganismiShewanella loihica (strain ATCC BAA-1088 / PV-4)Imported
Taxonomic identifieri323850 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000001558 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi323850.Shew_2535.

Structurei

3D structure databases

ProteinModelPortaliA3QG03.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiALGAFCS.
OrthoDBiEOG6MSRZP.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

Sequencei

Sequence statusi: Complete.

A3QG03-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSKQTRQAT ASEEALMRIF TLPEAPNSTL GKIEKNLSEN LMGFLKESIV
60 70 80 90 100
AVEKPLTEIE KDFQAYQIPT APSFVSDYAE QMMQTLIAHS VHTSAPSFIG
110 120 130 140 150
HMTSALPYFV LPLSKMMVGL NQNLVKIETS KAFTPLERQV LGMMHHMVYG
160 170 180 190 200
QTEEFYQSWM HSASHSLGAF CSGGTVANIT ALWIARNRLL KPDGDFKGVA
210 220 230 240 250
QSGLMRALRH YGYDDLAILV STRGHYSLGK AADLLGIGRD NIISVPCASD
260 270 280 290 300
NKVDVAKMRE AAEQLAEQNI KVMAIVGVAG TTETGNIDPL DELANLAEQL
310 320 330 340 350
GCHFHVDAAW GGASLLSSKY RHLLAGIERA DSVTIDAHKQ MYVPMGAGMV
360 370 380 390 400
LFKDPEFANA IKHHAEYILR KGSKDLGSQT LEGSRPGMAM LVHACLQIIG
410 420 430 440 450
RDGYEILINN SLEKARYFGE LIAAQDDFQL VSRPELCLLT YRYVPAKVQA
460 470 480 490 500
QLNEAVAAGD AARVSEINAL LDGLTKFIQK RQREQGKSFV SRTRIIPANN
510 520 530 540
LEQTSVVFRV VLANPLTSNE ILQQVLDEQR DIAKLDDRFL PKLLAL
Length:546
Mass (Da):60,147
Last modified:April 3, 2007 - v1
Checksum:i26DCF164EB700BCE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000606 Genomic DNA. Translation: ABO24401.1.
RefSeqiWP_011866332.1. NC_009092.1.
YP_001094660.1. NC_009092.1.

Genome annotation databases

EnsemblBacteriaiABO24401; ABO24401; Shew_2535.
KEGGislo:Shew_2535.
PATRICi23516961. VBISheLoi132094_2535.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000606 Genomic DNA. Translation: ABO24401.1.
RefSeqiWP_011866332.1. NC_009092.1.
YP_001094660.1. NC_009092.1.

3D structure databases

ProteinModelPortaliA3QG03.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi323850.Shew_2535.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABO24401; ABO24401; Shew_2535.
KEGGislo:Shew_2535.
PATRICi23516961. VBISheLoi132094_2535.

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiALGAFCS.
OrthoDBiEOG6MSRZP.

Enzyme and pathway databases

BioCyciSLOI323850:GHQJ-2624-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-1088 / PV-4Imported.

Entry informationi

Entry nameiA3QG03_SHELP
AccessioniPrimary (citable) accession number: A3QG03
Entry historyi
Integrated into UniProtKB/TrEMBL: April 3, 2007
Last sequence update: April 3, 2007
Last modified: May 27, 2015
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.