Skip Header

Contribute Send feedback
Read comments (?) or add your own

A3QDV7 (A3QDV7_SHELP) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Cystathionine beta-lyase EMBL ABO23655.1
EC=4.4.1.8 EMBL ABO23655.1
Gene names
Ordered Locus Names:Shew_1789
OrganismShewanella loihica (strain ATCC BAA-1088 / PV-4) [Complete proteome] [HAMAP] EMBL ABO23655.1
Taxonomic identifier323850 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length395 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLyase EMBL ABO23655.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcellular amino acid metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: InterPro

   Molecular functioncystathionine beta-lyase activity

Inferred from electronic annotation. Source: EC

pyridoxal phosphate binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A3QDV7 [UniParc].

Last modified April 17, 2007. Version 1.
Checksum: 4896BF2301F26E19

FASTA39543,379
        10         20         30         40         50         60 
MKKETKIVSV GRDKKWSKGV INPPVFRAST VVFDTIEDMR HATKNRANGA MFYGRRGTPT 

        70         80         90        100        110        120 
HFAFQAAIAE LEGGVGTALY PSGSAAISGA LLSFLKAGDH LLMVDTAYEP TRDLCDKLLK 

       130        140        150        160        170        180 
GFGIETTYYD PLIGDGIEAL IRPNTKVLFL ESPGSITLEV QDVPTLSAIA HRHNLVVMLD 

       190        200        210        220        230        240 
NTWASPINCR PFELGVDISI QAATKYIVGH SDVMLGTATA NQAHWDQLRE NSYLMGQCTS 

       250        260        270        280        290        300 
ADDIYLASRG LRTLGVRMAQ HEKNGLEVAN LLATRPEVDH LRHPAFASCP GHEFFKRDFS 

       310        320        330        340        350        360 
ASNGLFSFVL KRGNIKAITA FVEGMDHFKM GFSWGGYESL ILGVFGIDKL RTATQWDSSK 

       370        380        390 
PLIRLHVGLE NPEDLIKDLE AGFARYNAVL DGQSD

« Hide

References

[1]"Complete sequence of Shewanella loihica PV-4."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Mikhailova N., Romine M.F., Serres G., Fredrickson J., Tiedje J., Richardson P.
Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-1088 / PV-4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000606 Genomic DNA. Translation: ABO23655.1.
RefSeqYP_001093914.1. NC_009092.1.

3D structure databases

ProteinModelPortalA3QDV7.
SMRA3QDV7. Positions 2-385.
ModBaseSearch...

Protein-protein interaction databases

STRINGA3QDV7.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4924407.
GenomeReviewsGene locus Shew_1789 in contig CP000606_GR.
KEGGslo:Shew_1789.
NMPDRfig|323850.3.peg.1262.
PATRIC23515399. VBISheLoi132094_1786.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0626.
HOGENOMHBG754729.
OMAREQSYLM.
PhylomeDBA3QDV7.
ProtClustDBPRK09028.

Enzyme and pathway databases

BioCycSLOI323850:SHEW_1789-MONOMER.

Family and domain databases

InterProIPR000277. Cys/Met-Metab_PyrdxlP-dep_enz.
IPR006233. Cys_b_lyase_bac.
IPR015424. PyrdxlP-dep_Trfase_major_dom.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
Gene3DG3DSA:3.40.640.10. PyrdxlP-dep_Trfase_major_sub1. 1 hit.
G3DSA:3.90.1150.10. PyrdxlP-dep_Trfase_major_sub2. 1 hit.
KOK01760.
PANTHERPTHR11808:SF8. Cys_b_lyase_bac. 1 hit.
PTHR11808. Cys_Met_Meta_PP. 1 hit.
PfamPF01053. Cys_Met_Meta_PP. 1 hit.
[Graphical view]
PIRSFPIRSF001434. CGS. 1 hit.
SUPFAMSSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMsTIGR01324. Cysta_beta_ly_B. 1 hit.
PROSITEPS00868. CYS_MET_METAB_PP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA3QDV7_SHELP
AccessionPrimary (citable) accession number: A3QDV7
Entry history
Integrated into UniProtKB/TrEMBL: April 17, 2007
Last sequence update: April 17, 2007
Last modified: January 25, 2012
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info