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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Shew_1587

Organism
Shewanella loihica (strain ATCC BAA-1088 / PV-4)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSLOI323850:GHQJ-1643-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Shew_1587Imported
OrganismiShewanella loihica (strain ATCC BAA-1088 / PV-4)Imported
Taxonomic identifieri323850 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000001558: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi323850.Shew_1587.

Structurei

3D structure databases

ProteinModelPortaliA3QDA6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK10747.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A3QDA6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPEQLKSEPL EPAQRLPGIQ LAGSLEADRP ISEYLVSEKF DGVRGRWTGE
60 70 80 90 100
RMLTRSGQVI RLPAWFTKGF PTEPLDGELW IARQQFEAIS ALVRDKDADP
110 120 130 140 150
ERWRAVQFMV FDYPTIDSPF AERYALAVKR YANLSPFLQI IPQWRIQDSQ
160 170 180 190 200
ALNAALDEWV AQGAEGLMLH HQAAHYHAGR NGDLVKLKRY QDAEAKVIAY
210 220 230 240 250
FEGKGKYRGM MGALEVETNE GIRFKLGTGF SDEQRRHPPA IGSTVTYKYY
260 270
GLTHNGVPRF ASFMRVREPL
Length:270
Mass (Da):30,758
Last modified:April 3, 2007 - v1
Checksum:iF49DA739E9101122
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000606 Genomic DNA. Translation: ABO23454.1.
RefSeqiYP_001093713.1. NC_009092.1.

Genome annotation databases

EnsemblBacteriaiABO23454; ABO23454; Shew_1587.
GeneIDi4922440.
KEGGislo:Shew_1587.
PATRICi23515009. VBISheLoi132094_1591.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000606 Genomic DNA. Translation: ABO23454.1.
RefSeqiYP_001093713.1. NC_009092.1.

3D structure databases

ProteinModelPortaliA3QDA6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi323850.Shew_1587.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABO23454; ABO23454; Shew_1587.
GeneIDi4922440.
KEGGislo:Shew_1587.
PATRICi23515009. VBISheLoi132094_1591.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK10747.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Enzyme and pathway databases

BioCyciSLOI323850:GHQJ-1643-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-1088 / PV-4Imported.

Entry informationi

Entry nameiA3QDA6_SHELP
AccessioniPrimary (citable) accession number: A3QDA6
Entry historyi
Integrated into UniProtKB/TrEMBL: April 3, 2007
Last sequence update: April 3, 2007
Last modified: March 4, 2015
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.