A3QDA6 (A3QDA6_SHELP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ABO23454.1

Gene names

Ordered Locus Names:

Shew_1587

Organism

Shewanella loihica (strain ATCC BAA-1088 / PV-4) [Complete proteome] [HAMAP] EMBL ABO23454.1

Taxonomic identifier

323850 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella › Shewanella loihica

Protein attributes

Sequence length	270 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABO23454.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A3QDA6 [UniParc]. Last modified April 3, 2007. Version 1. Checksum: F49DA739E9101122	FASTA	270	30,758
	10 20 30 40 50 60 MPEQLKSEPL EPAQRLPGIQ LAGSLEADRP ISEYLVSEKF DGVRGRWTGE RMLTRSGQVI 70 80 90 100 110 120 RLPAWFTKGF PTEPLDGELW IARQQFEAIS ALVRDKDADP ERWRAVQFMV FDYPTIDSPF 130 140 150 160 170 180 AERYALAVKR YANLSPFLQI IPQWRIQDSQ ALNAALDEWV AQGAEGLMLH HQAAHYHAGR 190 200 210 220 230 240 NGDLVKLKRY QDAEAKVIAY FEGKGKYRGM MGALEVETNE GIRFKLGTGF SDEQRRHPPA 250 260 270 IGSTVTYKYY GLTHNGVPRF ASFMRVREPL

References

[1]

"Complete sequence of Shewanella loihica PV-4." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Mikhailova N., Romine M.F., Serres G., Fredrickson J., Tiedje J., Richardson P. Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-1088 / PV-4.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000606 Genomic DNA. Translation: ABO23454.1.
RefSeq	YP_001093713.1. NC_009092.1.
3D structure databases
ProteinModelPortal	A3QDA6.
ModBase	Search...
Protein-protein interaction databases
STRING	323850.Shew_1587.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABO23454; ABO23454; Shew_1587.
GeneID	4922440.
KEGG	slo:Shew_1587.
PATRIC	23515009. VBISheLoi132094_1591.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000293070.
KO	K01971.
OMA	VRGYWDG.
ProtClustDB	PRK09125.
Enzyme and pathway databases
BioCyc	SLOI323850:GHQJ-1643-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A3QDA6_SHELP

Accession

Primary (citable) accession number: A3QDA6

Entry history

Integrated into UniProtKB/TrEMBL:	April 3, 2007
Last sequence update:	April 3, 2007
Last modified:	May 29, 2013
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)