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A3QDA6

- A3QDA6_SHELP

UniProt

A3QDA6 - A3QDA6_SHELP

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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Shew_1587

Organism
Shewanella loihica (strain ATCC BAA-1088 / PV-4)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSLOI323850:GHQJ-1643-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Shew_1587Imported
OrganismiShewanella loihica (strain ATCC BAA-1088 / PV-4)Imported
Taxonomic identifieri323850 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000001558: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi323850.Shew_1587.

Structurei

3D structure databases

ProteinModelPortaliA3QDA6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK01971.
OMAiGKGQFEN.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A3QDA6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPEQLKSEPL EPAQRLPGIQ LAGSLEADRP ISEYLVSEKF DGVRGRWTGE
60 70 80 90 100
RMLTRSGQVI RLPAWFTKGF PTEPLDGELW IARQQFEAIS ALVRDKDADP
110 120 130 140 150
ERWRAVQFMV FDYPTIDSPF AERYALAVKR YANLSPFLQI IPQWRIQDSQ
160 170 180 190 200
ALNAALDEWV AQGAEGLMLH HQAAHYHAGR NGDLVKLKRY QDAEAKVIAY
210 220 230 240 250
FEGKGKYRGM MGALEVETNE GIRFKLGTGF SDEQRRHPPA IGSTVTYKYY
260 270
GLTHNGVPRF ASFMRVREPL
Length:270
Mass (Da):30,758
Last modified:April 3, 2007 - v1
Checksum:iF49DA739E9101122
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000606 Genomic DNA. Translation: ABO23454.1.
RefSeqiYP_001093713.1. NC_009092.1.

Genome annotation databases

EnsemblBacteriaiABO23454; ABO23454; Shew_1587.
GeneIDi4922440.
KEGGislo:Shew_1587.
PATRICi23515009. VBISheLoi132094_1591.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000606 Genomic DNA. Translation: ABO23454.1 .
RefSeqi YP_001093713.1. NC_009092.1.

3D structure databases

ProteinModelPortali A3QDA6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 323850.Shew_1587.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABO23454 ; ABO23454 ; Shew_1587 .
GeneIDi 4922440.
KEGGi slo:Shew_1587.
PATRICi 23515009. VBISheLoi132094_1591.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000293070.
KOi K01971.
OMAi GKGQFEN.
OrthoDBi EOG60919Q.

Enzyme and pathway databases

BioCyci SLOI323850:GHQJ-1643-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-1088 / PV-4Imported.

Entry informationi

Entry nameiA3QDA6_SHELP
AccessioniPrimary (citable) accession number: A3QDA6
Entry historyi
Integrated into UniProtKB/TrEMBL: April 3, 2007
Last sequence update: April 3, 2007
Last modified: October 1, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3